View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11393_low_3 (Length: 393)
Name: NF11393_low_3
Description: NF11393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11393_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 30888872 - 30889237
Alignment:
| Q |
15 |
ttgtgttgtgtatgatactacaaaatcactgcaggtggcatgagatacatcaaacaagaattcaacttagaaactgatccaacgcttgaaggactaattg |
114 |
Q |
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| T |
30888872 |
ttgtgttgtgtatgatactacaaaatcactgcaggtggcatgagatacatcaaacaagaattcaacttagaaactgatccaacgcttgaaggactaattg |
30888971 |
T |
|
| Q |
115 |
tgtccatgtcatttctcactggaacatttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcat |
214 |
Q |
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| T |
30888972 |
tgtccatgtcatttctcactggaacatttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcat |
30889071 |
T |
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| Q |
215 |
gtttttcttaagtggtttagttatgttatgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagt |
314 |
Q |
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| T |
30889072 |
gtttttcttaagtggtttagttatgttatgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagt |
30889171 |
T |
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| Q |
315 |
ctaactcctctctacatatctgagatagcaccacctgatataagaggcttgctcaatactcttcct |
380 |
Q |
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| T |
30889172 |
ctaactcctctctacatatctgagatagcaccacctgatataagaggcttgctcaatactcttcct |
30889237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 9953218 - 9953177
Alignment:
| Q |
320 |
tcctctctacatatctgagatagcaccacctgatataagagg |
361 |
Q |
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| T |
9953218 |
tcctctttacatatctgagatagcaccacctgatataagagg |
9953177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 19696046 - 19696005
Alignment:
| Q |
320 |
tcctctctacatatctgagatagcaccacctgatataagagg |
361 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19696046 |
tcctctttacatatctgagatagcaccacctgatataagagg |
19696005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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