View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11393_low_4 (Length: 384)
Name: NF11393_low_4
Description: NF11393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11393_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 5946244 - 5946619
Alignment:
| Q |
1 |
ttcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946244 |
ttcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagata |
5946343 |
T |
|
| Q |
101 |
tctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946344 |
tctttacagaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcc |
5946443 |
T |
|
| Q |
201 |
atcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946444 |
atcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaa |
5946543 |
T |
|
| Q |
301 |
atatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5946544 |
atatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcaggcctatgct |
5946619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 31717278 - 31716903
Alignment:
| Q |
1 |
ttcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagata |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
31717278 |
ttcttaggtaccggtatcttcctccaagcaagaagcttcaaaagcgttgacttgcccattccattcggcccaatcaaaccataacgttttccatgggata |
31717179 |
T |
|
| Q |
101 |
tctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31717178 |
tcttcactgaagtattcttcagaagttctttaccccgagcagccacagaaaaattttctatcgttatatctttgacattagcatcagcaccatcgtctcc |
31717079 |
T |
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| Q |
201 |
atcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaa |
300 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31717078 |
atcaagcactgaagcccgacttccaattacaacagtgaaagcatcacgatcatccctaagagcttccttctttgcctgttcagccacatgggcagctaaa |
31716979 |
T |
|
| Q |
301 |
atatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgct |
376 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31716978 |
atatctttcttttctcgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatctggcctatgct |
31716903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 28619020 - 28619378
Alignment:
| Q |
1 |
ttcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttttccatgagata |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28619020 |
ttcttaggtactggtatcttcctccaagcaagaagcttcaaaagtgttgacttgcccattccattcggcccaagcaaaccataccgttttccatgagata |
28619119 |
T |
|
| Q |
101 |
tctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagcaccatcgtctcc |
200 |
Q |
| |
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|||| ||||| | |||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
28619120 |
tcttcactgacgcattcttcagaagttctttgccacgagcagacacagaaaatttatctatcattatatctttgacattagcattagcaccatcgtctcc |
28619219 |
T |
|
| Q |
201 |
atcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacatgggcagctaaa |
300 |
Q |
| |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
28619220 |
atcaagaaccgaagcccgacttccaatgacaacagtgaaagcatcacgatcatctttaagagcttctttttttgcctgttcagccaaatgggcagctaaa |
28619319 |
T |
|
| Q |
301 |
atatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggctt |
359 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28619320 |
atatctttcttttcacgctttttcaactcttttgcagcaatagacacctcaagtggctt |
28619378 |
T |
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