View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11393_low_5 (Length: 297)
Name: NF11393_low_5
Description: NF11393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11393_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 12692092 - 12692374
Alignment:
| Q |
1 |
aattgttaattaaattaatatttttatataaagaattgtannnnnnnn-gtgaaccaatactttagtttgaaatatatgggactaaaccaatacaagtat |
99 |
Q |
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| T |
12692092 |
aattgttaattaaattaatatttttatataaagaattgtttttttttttgtaaaccaatactttagtttgaaatatgtgggactaaaccaatacaagtat |
12692191 |
T |
|
| Q |
100 |
tttagtttgaaatattaattctttaattaaattaacgaggggatattgttagctcattgcccgtcaccggaacataatcacatcatccctttcataccta |
199 |
Q |
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| T |
12692192 |
tttagtttgaaatattaattctttaattaaattaacgaggggatattgttagctcattgcccgtcaccggaacataatcacatcatccctttcataccta |
12692291 |
T |
|
| Q |
200 |
caactgacaaagaaaccaatgtaaagaacaccgacgagatcgacaaacacttgttaactcagtcactatatcaacgtccatgt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692292 |
caactgacaaagaaaccaatgtaaagaacaccgacgagatcgacaaacacttgttaactcagtcactatatcaacgtccatgt |
12692374 |
T |
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