View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11394_high_5 (Length: 350)
Name: NF11394_high_5
Description: NF11394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11394_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 28724736 - 28725069
Alignment:
| Q |
18 |
gaaaacagtttcaaggcacattcaaggcaaaaccattttccctcaaaggaaaatgtatcaagaagagaaaactcatctccattagtgtggttgcaacaaa |
117 |
Q |
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| T |
28724736 |
gaaaacagtttcaaggcacattcaaggcaaaaccattttccctcaaaggaaaatgtatcaagaagagaaaactcatctccattagtgtggttgcaacaaa |
28724835 |
T |
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| Q |
118 |
aataaagtcgtcatcagaagaagaaaaagttcatgatcat------------tacaaaaaattagtaggtaattttattgacgatcaagaagtgaagatg |
205 |
Q |
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| T |
28724836 |
aataaagtcgtcatcagaagaagaaaaagttcatgatcatgagcaaactcattacaaaaaattagtaggtaattttattgacgatcaagaagtgaagatg |
28724935 |
T |
|
| Q |
206 |
actttgtctcactggaaagaactgagaatacccctgaaaataaagcatgagcgacaaattgctcgactccaacttgagcaaattcaaaacaccgctggct |
305 |
Q |
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| T |
28724936 |
actttgtctcactggaaagaactgagaatacccctgaaaataaagtatgagagacaaattgctcgactccaacttgagcaaattcaaaacaccgctggct |
28725035 |
T |
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| Q |
306 |
ttaacgacgacatgaatgctttgcatgatgtcca |
339 |
Q |
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| T |
28725036 |
ttaacgacgacatgaatgctttgcatgatttcca |
28725069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 28727269 - 28727320
Alignment:
| Q |
18 |
gaaaacagtttcaaggcacattcaaggcaaaaccattttccctcaaaggaaa |
69 |
Q |
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| T |
28727269 |
gaaaagagtttcaaggaacattcaaggtaaaacccttttccctcaaaggaaa |
28727320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 28727472 - 28727546
Alignment:
| Q |
251 |
catgagcgacaaattgctcgactccaacttgagcaaattcaaaacaccgctggctttaacgacgacatgaatgct |
325 |
Q |
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| T |
28727472 |
catgagagacaaatggcttgactccaactcgagcaaataaaaaacaccgctggatttaacgataacatggatgct |
28727546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 16857971 - 16857920
Alignment:
| Q |
37 |
attcaaggcaaaaccattttccctcaaaggaaaatgtatcaagaagagaaaa |
88 |
Q |
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| T |
16857971 |
attcaaggcaaaaccattttccatcaaaggaaaatgtgtcaagaagagaaaa |
16857920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 36086991 - 36086955
Alignment:
| Q |
261 |
aaattgctcgactccaacttgagcaaattcaaaacac |
297 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
36086991 |
aaatcgctcgactcaaacttgagcaaattcaaaacac |
36086955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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