View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11394_low_2 (Length: 539)

Name: NF11394_low_2
Description: NF11394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11394_low_2
NF11394_low_2
[»] chr4 (2 HSPs)
chr4 (18-441)||(46477475-46477900)
chr4 (408-440)||(22210822-22210854)
[»] chr7 (1 HSPs)
chr7 (417-526)||(20559541-20559650)
[»] chr5 (3 HSPs)
chr5 (420-460)||(34088032-34088072)
chr5 (406-463)||(39893354-39893411)
chr5 (414-463)||(42364226-42364275)
[»] chr6 (2 HSPs)
chr6 (408-463)||(16128323-16128378)
chr6 (412-456)||(690977-691022)
[»] scaffold0199 (1 HSPs)
scaffold0199 (407-456)||(17013-17062)
[»] chr2 (2 HSPs)
chr2 (419-456)||(42818853-42818890)
chr2 (408-456)||(17621096-17621144)
[»] chr8 (1 HSPs)
chr8 (408-456)||(12328781-12328829)
[»] chr1 (1 HSPs)
chr1 (407-463)||(26468300-26468356)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 46477900 - 46477475
Alignment:
Q  18 attactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccacattatacagtaatatttcaatcaattaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46477900 attactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccacattatacagtaatatttccatcaattaa 46477801  T
Q  118 attaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaatactaattccatcacaaaggtatttctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477800 attaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaatactaattccatcacaaaggtatttctc 46477701  T
Q  218 cacatatgaacacagggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccactttgctatgttccacaaagtctacaacaatc 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46477700 cacatatgaacacaaggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccactttgctatgttctacaaagtctacaacaatc 46477601  T
Q  318 aaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtctatactacaaaccagatatagat--atat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  46477600 aaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtctatactacaaaccagatatagatatatat 46477501  T
Q  416 tagttattcaatgaatttaaaaagtg 441  Q
    ||||||||||||||||||||||||||    
T  46477500 tagttattcaatgaatttaaaaagtg 46477475  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 22210854 - 22210822
Alignment:
Q  408 agatatattagttattcaatgaatttaaaaagt 440  Q
    |||||||||| ||||||||||||||||||||||    
T  22210854 agatatattaattattcaatgaatttaaaaagt 22210822  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 417 - 526
Target Start/End: Complemental strand, 20559650 - 20559541
Alignment:
Q  417 agttattcaatgaatttaaaaagtgattatttgtttataacagtgactatagggtgtaatgtatagttaaaatttgtgttaacttatgtcccttaccttt 516  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20559650 agttattcaatgaatttaaaaagtgattatttgtttataatagtgactatagggtgtaaggtatagttaaaatttgtgttaacttatgtcccttaccttt 20559551  T
Q  517 tgagacgtct 526  Q
    ||||||||||    
T  20559550 tgagacgtct 20559541  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 34088072 - 34088032
Alignment:
Q  420 tattcaatgaatttaaaaagtgattatttgtttataacagt 460  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  34088072 tatttaatgaatttaaaaagtgattttttgtttataacagt 34088032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 39893411 - 39893354
Alignment:
Q  406 atagatatattagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 463  Q
    ||||||| || | |||||||||||| ||||||||||||| ||| ||||||| ||||||    
T  39893411 atagatacatcaattattcaatgaacttaaaaagtgattgtttatttataatagtgac 39893354  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 42364275 - 42364226
Alignment:
Q  414 attagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 463  Q
    |||| |||||||||| ||||||||||| | | ||||||||||||||||||    
T  42364275 attaattattcaatgtatttaaaaagtaaatttttgtttataacagtgac 42364226  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 463
Target Start/End: Original strand, 16128323 - 16128378
Alignment:
Q  408 agatatattagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 463  Q
    ||||||||||||| || |||||||| ||||| ||||| ||||||||||| ||||||    
T  16128323 agatatattagttgtttaatgaattaaaaaattgattttttgtttataatagtgac 16128378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 690977 - 691022
Alignment:
Q  412 atattagttattcaatgaatttaaaaag-tgattatttgtttataa 456  Q
    |||||||||||||||||||||||||||| || || |||||||||||    
T  690977 atattagttattcaatgaatttaaaaagttgtttttttgtttataa 691022  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 17013 - 17062
Alignment:
Q  407 tagatatattagttattcaatgaatttaaaaagtgattatttgtttataa 456  Q
    |||||||||||||||||||| |||| |||||| ||| |||||| ||||||    
T  17013 tagatatattagttattcaaagaatctaaaaattgaatatttgcttataa 17062  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 42818890 - 42818853
Alignment:
Q  419 ttattcaatgaatttaaaaagtgattatttgtttataa 456  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  42818890 ttattcaatgaacttaaaaagtgattttttgtttataa 42818853  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 17621144 - 17621096
Alignment:
Q  408 agatatattagttattcaatgaatttaaaaagtgattatttgtttataa 456  Q
    ||||||| || ||||||||||||||||||||||  || |||||||||||    
T  17621144 agatataataattattcaatgaatttaaaaagttgttttttgtttataa 17621096  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 12328781 - 12328829
Alignment:
Q  408 agatatattagttattcaatgaatttaaaaagtgattatttgtttataa 456  Q
    ||||| ||||||||||||||| ||||||||||| | | |||||||||||    
T  12328781 agatacattagttattcaatggatttaaaaagttaatttttgtttataa 12328829  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 26468356 - 26468300
Alignment:
Q  407 tagatatattagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 463  Q
    |||||| |||| |||||||||| |||||||||||||   ||||||||||| ||||||    
T  26468356 tagatacattaattattcaatgtatttaaaaagtgaaattttgtttataatagtgac 26468300  T

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