View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11394_low_3 (Length: 398)
Name: NF11394_low_3
Description: NF11394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11394_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 4243379 - 4243746
Alignment:
| Q |
16 |
caaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243379 |
caaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatg |
4243478 |
T |
|
| Q |
116 |
tcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243479 |
tcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagt |
4243578 |
T |
|
| Q |
216 |
ctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243579 |
ctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaa |
4243678 |
T |
|
| Q |
316 |
ccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtc |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243679 |
ccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtc |
4243746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 6186435 - 6186790
Alignment:
| Q |
16 |
caaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatg |
115 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
6186435 |
caaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttcatcagccatcattttcttcattgaatatgcaagtgtcaatg |
6186534 |
T |
|
| Q |
116 |
tcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagt |
215 |
Q |
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|
||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
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| T |
6186535 |
tcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgt |
6186634 |
T |
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| Q |
216 |
ctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaa |
315 |
Q |
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||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||| |
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| T |
6186635 |
ctttctaccattgaattctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaa |
6186734 |
T |
|
| Q |
316 |
ccaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttc |
371 |
Q |
| |
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||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||| |
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|
| T |
6186735 |
ccaacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttc |
6186790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 38358062 - 38358195
Alignment:
| Q |
28 |
gctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatg |
127 |
Q |
| |
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|||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||| | ||||| || ||||| || || | ||||||||| |||| |
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| T |
38358062 |
gctgatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatg |
38358161 |
T |
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| Q |
128 |
gtaaaccctcggggatagcaacaacgacaatagt |
161 |
Q |
| |
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| |||||||| ||||| ||||| || |||||||| |
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| T |
38358162 |
gcaaaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 39951669 - 39951752
Alignment:
| Q |
81 |
catcattttcttcattgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaac |
164 |
Q |
| |
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||||||||||||||||| | | || || ||||||| ||||||||||||||||||||||| | |||||| ||||| || ||||| |
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| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaac |
39951752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
110 |
tcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagca |
168 |
Q |
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|||||||||||||||| |||||||| || || | ||||||||| ||||| ||||||||| |
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| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
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