View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11394_low_5 (Length: 352)

Name: NF11394_low_5
Description: NF11394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11394_low_5
NF11394_low_5
[»] chr1 (9 HSPs)
chr1 (148-338)||(22765876-22766065)
chr1 (148-338)||(27690180-27690370)
chr1 (148-338)||(30550623-30550813)
chr1 (148-338)||(37623621-37623811)
chr1 (60-110)||(22765788-22765838)
chr1 (60-110)||(27690408-27690458)
chr1 (1-58)||(22611708-22611765)
chr1 (60-110)||(30550544-30550594)
chr1 (60-110)||(37623537-37623587)
[»] chr8 (2 HSPs)
chr8 (148-318)||(13360731-13360901)
chr8 (60-110)||(13360643-13360693)
[»] chr2 (5 HSPs)
chr2 (158-338)||(41295490-41295670)
chr2 (60-110)||(41295392-41295442)
chr2 (74-103)||(35800832-35800861)
chr2 (60-93)||(45048592-45048625)
chr2 (157-217)||(35800693-35800752)
[»] chr3 (4 HSPs)
chr3 (148-338)||(34902027-34902211)
chr3 (67-110)||(786213-786256)
chr3 (60-110)||(34901939-34901989)
chr3 (67-103)||(19251611-19251647)
[»] chr7 (1 HSPs)
chr7 (65-106)||(18802177-18802218)
[»] chr4 (1 HSPs)
chr4 (1-58)||(14944022-14944079)
[»] chr5 (1 HSPs)
chr5 (1-58)||(19220659-19220716)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 22765876 - 22766065
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||    
T  22765876 aacatcatgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacc-aatcataaatcgaagataaatcagacctgaaa 22765974  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  22765975 atcgaaatcgaaaacgcaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattaaccgtgtggttgttcacact 22766065  T

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Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 148 - 338
Target Start/End: Complemental strand, 27690370 - 27690180
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  27690370 aacatcatgctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagacctgaaa 27690271  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
    | || |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27690270 aacgaaatcgaaaactgaacagaagcagaaaatcgaagacgagacttgtatcaacgtccattctgctattaaccgtgtggttgttcacact 27690180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 30550623 - 30550813
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||  |||||    
T  30550623 aacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatcataaaacaaagataaatcagacctgaaa 30550722  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  30550723 atcgaaatcgaaaactaaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaaccgtgtggttgttcacact 30550813  T

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Target: chr1; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 37623621 - 37623811
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||    
T  37623621 aacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatcataaaccgaagataaatcagacctgaaa 37623720  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
     ||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  37623721 ttcgaaataaaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaaccgtgtggttgttcacact 37623811  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 22765788 - 22765838
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22765788 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 22765838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 27690458 - 27690408
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27690458 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 27690408  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22611708 - 22611765
Alignment:
Q  1 tgtacactgaagttgcaacttgtaacgtagtggaagcaattgtggacgctgttgaaaa 58  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  22611708 tgtacactgaagttgcaacttgtaacgtagtggaagcgattgtggacgctgtcgaaaa 22611765  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 30550544 - 30550594
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30550544 caacaaccaacaacacacaaataatacaaataaatcaccataaacacctaa 30550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 37623537 - 37623587
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37623537 caacaactaacaacacacaattaatacaaataaatcaccataaacacctaa 37623587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 13360731 - 13360901
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||  |||||    
T  13360731 aacatcatgctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatcataaatctaagataaatcagacctgaaa 13360830  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctatta 318  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  13360831 atcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattatgctatta 13360901  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 13360643 - 13360693
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13360643 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 13360693  T

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Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 158 - 338
Target Start/End: Original strand, 41295490 - 41295670
Alignment:
Q  158 tcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaaatcgtaatcg 257  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||| ||| |||||    
T  41295490 tcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatcataaaccgaagataaatcagacctgaaattcgaaatcg 41295589  T
Q  258 aaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  41295590 aaaactaaacagaagcggaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaaccgtgtggttgttcacact 41295670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 41295392 - 41295442
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41295392 caacaactaacaacacacaattaatacaaataaatcaccataaacacctaa 41295442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 35800861 - 35800832
Alignment:
Q  74 acacaattaatacaaataaatcaccataaa 103  Q
    ||||||||||||||||||||||||||||||    
T  35800861 acacaattaatacaaataaatcaccataaa 35800832  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 45048625 - 45048592
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaa 93  Q
    |||| |||||||||||||||||||||||||||||    
T  45048625 caaccaccaacaacacacaattaatacaaataaa 45048592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 35800752 - 35800693
Alignment:
Q  157 ctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaa 217  Q
    ||||||||||||||| ||||| ||||  || | |||||||||| |||||||||||||||||    
T  35800752 ctcaagaacaaaaatgcaacatcccaagaattgaacacaaacg-aagcatatacaacccaa 35800693  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 34902027 - 34902211
Alignment:
Q  148 aacatcgtgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacccaatcataaatcgaagataaatcagatatgaaa 247  Q
    |||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | |  ||||     
T  34902027 aacatcatgctcaagaacaaaaatccaacaccccttaaactgatcacaaacgaaagcatatacaacctaatcataaatcgaagataaataacacctgaa- 34902125  T
Q  248 atcgtaatcgaaaactgaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattatccgtgtggttgctcacact 338  Q
         |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  34902126 -----aatcgaaaactgaacagaagcagaaaatcgaagacgaaatttgtatcaacatccattctgctattaaccgtgtggttgttcacact 34902211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 786256 - 786213
Alignment:
Q  67 caacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  786256 caacaacacacaattaatacaaataaatcaccataaacacctaa 786213  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 34901939 - 34901989
Alignment:
Q  60 caacaaccaacaacacacaattaatacaaataaatcaccataaacacctaa 110  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  34901939 caacaaccaacaacacataattaatataaataaatcaccataaacacctaa 34901989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 19251647 - 19251611
Alignment:
Q  67 caacaacacacaattaatacaaataaatcaccataaa 103  Q
    |||||||| || |||||||||||||||||||||||||    
T  19251647 caacaacatactattaatacaaataaatcaccataaa 19251611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 18802218 - 18802177
Alignment:
Q  65 accaacaacacacaattaatacaaataaatcaccataaacac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18802218 accaacaacacacaattaatacaaataaatcaccataaacac 18802177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14944079 - 14944022
Alignment:
Q  1 tgtacactgaagttgcaacttgtaacgtagtggaagcaattgtggacgctgttgaaaa 58  Q
    |||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||    
T  14944079 tgtacactgaagttgcaagttgtaacgtggtggacgccattgtggacgctgttgaaaa 14944022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19220659 - 19220716
Alignment:
Q  1 tgtacactgaagttgcaacttgtaacgtagtggaagcaattgtggacgctgttgaaaa 58  Q
    |||||||||||||||||| ||||||||| |||||||| ||||  ||| ||||||||||    
T  19220659 tgtacactgaagttgcaagttgtaacgtggtggaagccattgcagacactgttgaaaa 19220716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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