View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_high_13 (Length: 337)
Name: NF11395_high_13
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_high_13 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 2308904 - 2309227
Alignment:
| Q |
14 |
ggagcacagatacgcgatgacttgaatacgagaggtggagaattgagtccgagaaacccctgtgtcgcatgagaagccttgacaggctttatcggagata |
113 |
Q |
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| T |
2308904 |
ggagcactgatacgcgatgacttgaatacgagaggtggagaattgagtccgagaaacccctgtgtcgcatgagaagccttgacaggctttatcggagata |
2309003 |
T |
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| Q |
114 |
gagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaagatgtaaattttattccttattcatgatactagaaatgaaatgaaaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309004 |
gagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaagatgtaaattttattccttattcatgatactagaaatgaaatgaaaga |
2309103 |
T |
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| Q |
214 |
atccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacatccctaaacaaaaaagacggttctagaaacacaatcaacacaggatg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309104 |
atccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacatccctaaacaaaaaagacggttctagaaacacaatcaacacaggata |
2309203 |
T |
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| Q |
314 |
ccaataatcagttatcaatgtgta |
337 |
Q |
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| T |
2309204 |
ccaataatcagttatcaatgtgta |
2309227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 2318044 - 2318366
Alignment:
| Q |
14 |
ggagcacagatacgcgatgacttgaatacgagaggtggagaattgagtccgagaaacccctgtgtcgcatgagaagccttgacaggctttatcggagata |
113 |
Q |
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||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2318044 |
ggagcactgatacgtggtgacttgaatacgaggggtggagaattgagtccgagaaacccatgtgtcgcatgagaagccttgacaggctttatcggagata |
2318143 |
T |
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| Q |
114 |
gagtgttgacaaatctcaaaaagggagattcctgaaagtaagaagacggcaagatgtaaattttattccttattcatgatactagaaatgaaatgaaaga |
213 |
Q |
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| T |
2318144 |
gagtgttgacaaatctcaaaaagggagattcct-aaagtaagaagacgacaagatgtaaatttcattccttattggtgatactagaaatgaaatgaaaga |
2318242 |
T |
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| Q |
214 |
atccgaaaaaatactacacaagtcaacgtaaataacacactaatctcaagacatccctaaacaaaaaagacggttctag-aaacacaatcaacacaggat |
312 |
Q |
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||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
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| T |
2318243 |
atctg-aaaaatactacacaagtcaaccaaaataacacactagtctcaagacatccctaaacaaaaaagatggttctagaaaacacaatcaacacaagat |
2318341 |
T |
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| Q |
313 |
gccaataatcagttatcaatgtgta |
337 |
Q |
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| T |
2318342 |
accaataattggttatcaatgtgta |
2318366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 144829 - 144899
Alignment:
| Q |
74 |
tgtgtcgcatgagaagccttgacaggctttatcggagatagagtgttgacaaatctcaaaaagggagattc |
144 |
Q |
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|||||| |||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||||||||| |
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| T |
144829 |
tgtgtcacatgagaagccttgacagactttattagagataaagtgttaacaaatctcaaaaggggagattc |
144899 |
T |
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