View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11395_high_28 (Length: 237)
Name: NF11395_high_28
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2309506 - 2309305
Alignment:
| Q |
19 |
acaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgcgttgtggtgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309506 |
acaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgcgttgtggtgc |
2309407 |
T |
|
| Q |
119 |
cgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaactcactgaaattgcttttggtctaccctctctgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2309406 |
cgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaattcactgaaattgcttttggtctaccctctctgat |
2309307 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
2309306 |
gt |
2309305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2318643 - 2318444
Alignment:
| Q |
19 |
acaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgcgttgtggtgc |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||| | |||| |||||| |
|
|
| T |
2318643 |
acaatagcggtttgttcagattctgctacactatagccactatgtgacagcgttgtgttaatggactttagaggatttatgcacttatgcg--gtggtgt |
2318546 |
T |
|
| Q |
119 |
cgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaactcactgaaattgcttttggtctaccctctctgat |
218 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
2318545 |
tgcactttgataattgattgttgtaagagacttgtttgaaattatatttgtttgattggataaaattcactacgattgcttttggtctaccctctcttat |
2318446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 16950266 - 16950230
Alignment:
| Q |
29 |
tttgttcagattctgctacactatagccactatttga |
65 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
16950266 |
tttgttcaaattctgctacgctatagccactatttga |
16950230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University