View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11395_high_29 (Length: 237)

Name: NF11395_high_29
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11395_high_29
NF11395_high_29
[»] chr4 (8 HSPs)
chr4 (145-223)||(50669839-50669917)
chr4 (2-76)||(50669696-50669770)
chr4 (32-76)||(48871204-48871248)
chr4 (32-76)||(48876508-48876552)
chr4 (32-76)||(48886890-48886934)
chr4 (28-72)||(48899380-48899424)
chr4 (18-76)||(37826366-37826424)
chr4 (26-74)||(7237125-7237173)
[»] chr5 (1 HSPs)
chr5 (8-76)||(9120383-9120454)
[»] chr8 (1 HSPs)
chr8 (28-76)||(4961894-4961942)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 50669839 - 50669917
Alignment:
Q  145 actgctttttgtaacataagctagtatgccacacaagctgatccaatatgttgtgaaatgtttaaatgtatgttgttgt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669839 actgctttttgtaacataagctagtatgccacacaagctgatccaatatgttgtgaaatgtttaaatgtatgttgttgt 50669917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 50669696 - 50669770
Alignment:
Q  2 ccccgctgaccatgaacaagttcaaaaagatgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669696 ccccgctgtccatgaacaagttcaaaaagatgacacaaacaagaagaacaaggttttgaaatattctccttcacc 50669770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 48871204 - 48871248
Alignment:
Q  32 tgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  48871204 tgacacaaacaagaagaatgaggttttgaattattctccttcacc 48871248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 48876508 - 48876552
Alignment:
Q  32 tgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  48876508 tgacacaaacaagaagaatgaggttttgaattattctccttcacc 48876552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 48886890 - 48886934
Alignment:
Q  32 tgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  48886890 tgacacaaacaagaagaatgaggttttgaattattctccttcacc 48886934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 48899380 - 48899424
Alignment:
Q  28 aagatgacacaaacaagaagaacaaggttttgaaatattctcctt 72  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||    
T  48899380 aagatgacataaacaagaagaaggaggttttgaaatattctcctt 48899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 37826424 - 37826366
Alignment:
Q  18 caagttcaaaaagatgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    |||||| || ||||||| ||||||||||||||  ||||||  |||||||||||||||||    
T  37826424 caagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttcacc 37826366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 7237173 - 7237125
Alignment:
Q  26 aaaagatgacacaaacaagaagaacaaggttttgaaatattctccttca 74  Q
    ||||||||||||||||||||| ||  | ||| |||||||||||||||||    
T  7237173 aaaagatgacacaaacaagaacaatgatgttgtgaaatattctccttca 7237125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9120383 - 9120454
Alignment:
Q  8 tgaccatgaacaagttcaaaaagatgacacaaacaagaagaacaa---ggttttgaaatattctccttcacc 76  Q
    |||| ||||||||| | ||  ||||||||||||||||||||| ||   ||||||||||||||||||||||||    
T  9120383 tgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaatattctccttcacc 9120454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 4961942 - 4961894
Alignment:
Q  28 aagatgacacaaacaagaagaacaaggttttgaaatattctccttcacc 76  Q
    ||||||||| ||| ||||||||  |||||||||||||||||| ||||||    
T  4961942 aagatgacataaataagaagaatcaggttttgaaatattctcattcacc 4961894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University