View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_high_4 (Length: 549)
Name: NF11395_high_4
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 4771257 - 4771773
Alignment:
| Q |
1 |
cccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttcagtcagagcaattaaatcagaatcatatatatgttgattattt |
100 |
Q |
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| T |
4771257 |
cccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttcagtcagagcaattaaatcagaatcatatatatgttgattattt |
4771356 |
T |
|
| Q |
101 |
taaacatgctaaaacaatgtcatgtaagtagagctcaaatgataaaatgttacagagacatttgatatgctcggacataagtgtgtatccgcaattcctt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4771357 |
taaacatgctaaaacaatgttatgtaagtagagctcaaatgataaaatgttacagagacatttgatatgctcggacataagtgtgtatccgcaattcctt |
4771456 |
T |
|
| Q |
201 |
acttctcagcacctattgtaagtttcaccgctagcctttctaaaatcagataacaatattaaaacaattatacaatcaaaataaaatggtaaaaaggttc |
300 |
Q |
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| T |
4771457 |
acttctcagcacctattgtaagtttcaccgctagcctttctaaaaccagataacaatattaaaacaattatacaatcaaaataaaatggtaaaaaggttc |
4771556 |
T |
|
| Q |
301 |
aattggtaaacatcatcgttgtaaaacatgtttatcaaaaaatcacatttcactatagagatattttaaaaattaatataacgaagtgacacaatgaata |
400 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
4771557 |
aattggtaaacaccatcggtgtaaaacatgtttatcaaaaaatcacatttcactatagagatattttaaaaattaatataacaaagt---------aata |
4771647 |
T |
|
| Q |
401 |
tgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggagaggagggcactagtgcacggagtttagcaagatgaccattaatt |
500 |
Q |
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| T |
4771648 |
tgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggagaggagggcactagtgcacggagtttagcaagatgaccattaatt |
4771747 |
T |
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| Q |
501 |
ctgtttcttctcttcctctctgcttc |
526 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4771748 |
ctgtttcttctcttcctctctgcttc |
4771773 |
T |
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