View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11395_high_5 (Length: 546)

Name: NF11395_high_5
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11395_high_5
NF11395_high_5
[»] chr4 (38 HSPs)
chr4 (20-428)||(42404031-42404439)
chr4 (469-530)||(42404475-42404536)
chr4 (39-134)||(54069469-54069564)
chr4 (66-184)||(39603526-39603644)
chr4 (66-134)||(43505879-43505947)
chr4 (32-129)||(31076431-31076528)
chr4 (32-128)||(50681134-50681230)
chr4 (40-100)||(3155560-3155620)
chr4 (38-134)||(41336684-41336779)
chr4 (38-131)||(45935272-45935364)
chr4 (38-134)||(15177253-15177349)
chr4 (32-96)||(39691188-39691252)
chr4 (21-117)||(44797826-44797922)
chr4 (45-104)||(25904268-25904327)
chr4 (44-134)||(19494837-19494927)
chr4 (33-155)||(23319744-23319866)
chr4 (66-103)||(403481-403518)
chr4 (38-107)||(29388564-29388633)
chr4 (68-157)||(54425945-54426034)
chr4 (40-104)||(1706575-1706639)
chr4 (32-104)||(9760393-9760465)
chr4 (20-100)||(17884025-17884105)
chr4 (39-103)||(20108963-20109027)
chr4 (67-107)||(25885809-25885849)
chr4 (33-137)||(33587001-33587104)
chr4 (66-104)||(256882-256920)
chr4 (70-104)||(437515-437549)
chr4 (70-104)||(50662815-50662849)
chr4 (38-100)||(51630068-51630130)
chr4 (63-100)||(7601716-7601753)
chr4 (67-104)||(13216284-13216321)
chr4 (39-104)||(23459581-23459646)
chr4 (125-170)||(47119089-47119134)
chr4 (38-95)||(52746891-52746948)
chr4 (59-103)||(18425766-18425810)
chr4 (21-100)||(19039830-19039910)
chr4 (40-100)||(27043883-27043943)
chr4 (38-102)||(40174518-40174582)
[»] chr5 (26 HSPs)
chr5 (64-170)||(42500302-42500408)
chr5 (42-129)||(16458034-16458120)
chr5 (35-94)||(34102362-34102421)
chr5 (46-103)||(40426719-40426776)
chr5 (37-144)||(6521018-6521124)
chr5 (32-94)||(16937928-16937990)
chr5 (39-104)||(14932243-14932307)
chr5 (63-144)||(36227708-36227789)
chr5 (66-127)||(41197577-41197638)
chr5 (66-104)||(13697838-13697876)
chr5 (125-171)||(24030556-24030602)
chr5 (32-129)||(29925769-29925866)
chr5 (63-104)||(35446008-35446049)
chr5 (68-155)||(15015750-15015840)
chr5 (63-134)||(10639876-10639947)
chr5 (45-100)||(12425528-12425583)
chr5 (38-128)||(25461698-25461787)
chr5 (63-104)||(3932761-3932802)
chr5 (67-104)||(11835230-11835267)
chr5 (125-170)||(32372495-32372540)
chr5 (45-90)||(32372591-32372636)
chr5 (57-98)||(36797158-36797199)
chr5 (63-95)||(465916-465948)
chr5 (32-104)||(32009645-32009717)
chr5 (118-170)||(32021968-32022020)
chr5 (125-173)||(40439109-40439156)
[»] chr3 (32 HSPs)
chr3 (32-134)||(39980652-39980754)
chr3 (19-134)||(12862280-12862394)
chr3 (43-134)||(20170446-20170537)
chr3 (32-129)||(20880405-20880501)
chr3 (38-134)||(5331217-5331312)
chr3 (38-134)||(29520530-29520625)
chr3 (32-104)||(49034308-49034380)
chr3 (38-171)||(21335559-21335694)
chr3 (33-122)||(24684869-24684958)
chr3 (45-134)||(30956684-30956773)
chr3 (45-134)||(30972496-30972585)
chr3 (32-129)||(35959501-35959598)
chr3 (63-103)||(10704649-10704689)
chr3 (39-95)||(36189528-36189584)
chr3 (32-100)||(36631096-36631164)
chr3 (63-134)||(1508656-1508728)
chr3 (40-92)||(30443858-30443910)
chr3 (32-100)||(49092736-49092804)
chr3 (20-87)||(20257505-20257572)
chr3 (45-100)||(44061081-44061136)
chr3 (125-172)||(47249612-47249659)
chr3 (45-130)||(4400973-4401059)
chr3 (38-100)||(25447295-25447357)
chr3 (38-103)||(14145866-14145931)
chr3 (129-170)||(44747550-44747591)
chr3 (125-170)||(47132248-47132293)
chr3 (66-170)||(51929439-51929544)
chr3 (52-100)||(584003-584051)
chr3 (38-170)||(18405882-18406017)
chr3 (125-173)||(35959610-35959658)
chr3 (42-129)||(37689161-37689246)
chr3 (118-170)||(42747898-42747950)
[»] chr2 (32 HSPs)
chr2 (32-134)||(32592510-32592611)
chr2 (32-134)||(20933678-20933780)
chr2 (32-134)||(39659554-39659655)
chr2 (32-121)||(43279574-43279661)
chr2 (57-181)||(41812160-41812284)
chr2 (63-150)||(36125086-36125172)
chr2 (63-125)||(15305589-15305651)
chr2 (63-104)||(42420370-42420411)
chr2 (63-163)||(45229401-45229506)
chr2 (38-94)||(12464524-12464580)
chr2 (39-134)||(41407224-41407320)
chr2 (32-94)||(39073734-39073796)
chr2 (63-129)||(42868537-42868603)
chr2 (33-134)||(38916352-38916453)
chr2 (39-134)||(26201951-26202046)
chr2 (39-98)||(2416272-2416331)
chr2 (65-104)||(4026770-4026809)
chr2 (45-100)||(41851492-41851547)
chr2 (38-93)||(41875704-41875759)
chr2 (52-101)||(1875082-1875131)
chr2 (63-100)||(3611183-3611220)
chr2 (71-104)||(6541784-6541817)
chr2 (39-104)||(10490582-10490647)
chr2 (63-104)||(36114372-36114413)
chr2 (63-100)||(36114599-36114636)
chr2 (52-129)||(41241197-41241274)
chr2 (125-170)||(43570297-43570342)
chr2 (118-170)||(2981735-2981787)
chr2 (44-104)||(7988227-7988287)
chr2 (44-104)||(11201439-11201499)
chr2 (32-104)||(28206220-28206292)
chr2 (64-100)||(42457905-42457941)
[»] chr6 (18 HSPs)
chr6 (32-134)||(18076119-18076221)
chr6 (63-129)||(30536406-30536472)
chr6 (66-157)||(30536637-30536730)
chr6 (125-170)||(6538388-6538433)
chr6 (32-104)||(8147655-8147727)
chr6 (38-100)||(9093607-9093669)
chr6 (39-104)||(4163128-4163193)
chr6 (39-104)||(4224749-4224814)
chr6 (32-129)||(12836217-12836314)
chr6 (63-104)||(28621186-28621227)
chr6 (38-98)||(3785751-3785811)
chr6 (38-129)||(24626223-24626314)
chr6 (41-104)||(31623513-31623576)
chr6 (38-100)||(2735026-2735088)
chr6 (40-134)||(6200482-6200576)
chr6 (32-78)||(11784075-11784121)
chr6 (32-84)||(6538485-6538537)
chr6 (39-103)||(14492256-14492320)
[»] chr7 (36 HSPs)
chr7 (38-134)||(45806528-45806624)
chr7 (46-128)||(420289-420371)
chr7 (45-104)||(20258465-20258524)
chr7 (38-153)||(33266535-33266650)
chr7 (38-100)||(20526403-20526465)
chr7 (44-170)||(45338334-45338462)
chr7 (67-134)||(21568708-21568775)
chr7 (42-104)||(45264048-45264110)
chr7 (39-100)||(34083577-34083638)
chr7 (81-129)||(23989578-23989626)
chr7 (35-130)||(48507648-48507744)
chr7 (39-94)||(119873-119928)
chr7 (45-104)||(20269529-20269588)
chr7 (44-99)||(30180009-30180064)
chr7 (65-116)||(45004707-45004758)
chr7 (38-128)||(19302610-19302700)
chr7 (69-123)||(45806408-45806462)
chr7 (32-78)||(46280317-46280363)
chr7 (38-99)||(33678738-33678799)
chr7 (33-78)||(43694616-43694661)
chr7 (28-104)||(11700307-11700383)
chr7 (32-128)||(38138524-38138620)
chr7 (38-129)||(9210556-9210646)
chr7 (45-104)||(20234436-20234495)
chr7 (131-170)||(39393725-39393764)
chr7 (63-134)||(46078070-46078141)
chr7 (39-128)||(4970845-4970929)
chr7 (63-100)||(8960703-8960740)
chr7 (63-104)||(28613610-28613651)
chr7 (63-124)||(31247604-31247665)
chr7 (39-100)||(39279720-39279781)
chr7 (118-155)||(39907715-39907752)
chr7 (38-99)||(39967878-39967939)
chr7 (81-134)||(48140139-48140192)
chr7 (125-170)||(48469921-48469966)
chr7 (42-106)||(44216830-44216894)
[»] chr8 (27 HSPs)
chr8 (64-170)||(16825614-16825720)
chr8 (45-170)||(29168950-29169075)
chr8 (48-128)||(12497292-12497372)
chr8 (33-134)||(38750281-38750382)
chr8 (32-128)||(10758301-10758397)
chr8 (38-134)||(42043396-42043492)
chr8 (45-134)||(1058132-1058221)
chr8 (65-134)||(14956373-14956442)
chr8 (39-100)||(16733986-16734047)
chr8 (38-103)||(38602288-38602352)
chr8 (38-156)||(11861708-11861823)
chr8 (40-104)||(16736037-16736101)
chr8 (20-100)||(37353282-37353361)
chr8 (39-89)||(26771233-26771283)
chr8 (84-134)||(35749661-35749711)
chr8 (38-170)||(25930605-25930738)
chr8 (63-104)||(35534687-35534727)
chr8 (76-129)||(38353278-38353330)
chr8 (125-170)||(40981001-40981046)
chr8 (67-104)||(42237502-42237539)
chr8 (116-172)||(1929946-1930002)
chr8 (32-100)||(10114447-10114514)
chr8 (52-100)||(29205765-29205813)
chr8 (81-129)||(32975988-32976036)
chr8 (67-155)||(35644061-35644149)
chr8 (67-103)||(41475140-41475176)
chr8 (70-134)||(41821480-41821544)
[»] chr1 (41 HSPs)
chr1 (32-129)||(14385808-14385905)
chr1 (32-104)||(30581993-30582065)
chr1 (38-113)||(24915102-24915177)
chr1 (39-129)||(42174785-42174873)
chr1 (63-104)||(41184726-41184767)
chr1 (40-136)||(51929592-51929689)
chr1 (38-134)||(33541759-33541855)
chr1 (66-182)||(49938607-49938723)
chr1 (33-104)||(7862031-7862102)
chr1 (32-170)||(17603429-17603570)
chr1 (57-104)||(45145179-45145226)
chr1 (38-116)||(26678844-26678922)
chr1 (38-128)||(37769711-37769801)
chr1 (35-134)||(30191914-30192014)
chr1 (20-104)||(30581755-30581838)
chr1 (17-100)||(9572138-9572221)
chr1 (38-129)||(27976523-27976614)
chr1 (57-134)||(44932005-44932079)
chr1 (45-104)||(47432049-47432108)
chr1 (40-98)||(13809957-13810015)
chr1 (63-104)||(36872221-36872263)
chr1 (62-104)||(45661184-45661226)
chr1 (38-107)||(33186216-33186285)
chr1 (45-94)||(51688668-51688717)
chr1 (38-134)||(1510361-1510456)
chr1 (32-80)||(3234060-3234108)
chr1 (32-104)||(4576758-4576830)
chr1 (52-100)||(15477535-15477583)
chr1 (29-125)||(18556859-18556954)
chr1 (32-99)||(14576698-14576765)
chr1 (57-136)||(37473320-37473399)
chr1 (39-97)||(473124-473182)
chr1 (118-172)||(488896-488950)
chr1 (63-97)||(51190821-51190855)
chr1 (63-100)||(7028249-7028286)
chr1 (63-100)||(34619454-34619491)
chr1 (125-170)||(41195348-41195393)
chr1 (77-134)||(43589498-43589555)
chr1 (125-170)||(44217289-44217334)
chr1 (32-88)||(41505655-41505711)
chr1 (118-170)||(46423151-46423203)
[»] scaffold0018 (1 HSPs)
scaffold0018 (124-170)||(157978-158024)
[»] scaffold0699 (1 HSPs)
scaffold0699 (125-170)||(6785-6830)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-104)||(21358-21395)
[»] scaffold0045 (1 HSPs)
scaffold0045 (67-99)||(84209-84241)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 42404031 - 42404439
Alignment:
Q  20 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42404031 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagcgtatgcaaact 42404130  T
Q  120 tatacataagtgcttgtgctataaggtgcaaataagctattcatccaaacaagcactaaatcttgaaattgccagaacataatgtaattcacacttaacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42404131 tatacataagtgcttgtgctataaggtgcaaataagctattcatccaaacaagccctaaatcttgaaattgccagaacataatgtaattcacacttaacc 42404230  T
Q  220 ctcacgaataatgttaacccctatagttgctaaaccaaattaagcaatcagacatgagaaatgttgtgcaatgcatattagcagttacgaatatgaaaaa 319  Q
    ||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42404231 ctcacgaataatgttaacccctatagttgctgaacctaatcaaccaatcagacatgagaaatgttgtgcaatgcatgttagcagttacgaatatgaaaaa 42404330  T
Q  320 tctagcattgaacaatacgatacattctcaaaagcacatactgtaaaagtagaaatgaattaatcgcggtggaatcgtattctcgcgcgcgctacatgat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||    
T  42404331 tctagcattgaacaatacgatacattctcaaaagcacatactgtaaaagtagatatgaattaaacgcggtggaatcgtattctcgcgcgcgctacaggat 42404430  T
Q  420 cgtacatgg 428  Q
    |||||||||    
T  42404431 cgtacatgg 42404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 42404475 - 42404536
Alignment:
Q  469 tggatggatagctttctcacggcggccttgtttcctacggcgcccaactccgcctgcgttca 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42404475 tggatggatagctttctcacggcggccttgtttcctacggcgcccaactccgcctgcgttca 42404536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 54069469 - 54069564
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| |||||||||||||||||    
T  54069469 cttataaaaacaaattatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 39603526 - 39603644
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagctattcatcc 165  Q
    |||||||||||||| |||||||||||||||  ||||||| ||  ||||| |||||||| | |||||| ||||||||||| |||||||||||| || ||||    
T  39603526 aaaaacaatttaacgttattttatcttttgacataaaaatagcttatgcgaacttatatacaagtgcctgtgctataagctgcaaataagctgtttatcc 39603625  T
Q  166 aaacaagcactaaatcttg 184  Q
    ||| | || ||||||||||    
T  39603626 aaataggccctaaatcttg 39603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 43505947 - 43505879
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||||||||||| |||||||||||||||||||||||| ||  ||||||| |||||||||||||||||    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgctt 43505879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 31076431 - 31076528
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| |||||||||||||  ||| ||||| |||||||||| |||||  ||||||||||||||||| |||||| ||  ||||||| ||||||||||||    
T  31076431 aatatagcttataaaaacaatttatagcatatacaaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttatacataag 31076528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 50681134 - 50681230
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||| ||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| | ||||||||| ||  | || || |||||||||||    
T  50681134 aatatagcttatataaacaacttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaagcttatacataa 50681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 3155620 - 3155560
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||| ||||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||    
T  3155620 ttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattttatcttttgctata 3155560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 41336779 - 41336684
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||| |||||||  ||| | ||| ||||||||||||||||| |||||||||| ||||||||||||| ||  ||||||| | |||||||||||||||    
T  41336779 gcttagaaaaacaatttataacatatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataagtgctt 41336684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 45935272 - 45935364
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||||||||||| ||| | |||| ||||||||||| ||||| ||| || ||||||||||||||| | ||  ||||||| ||||||||||||||    
T  45935272 gcttataaaaacaactt-cggcatatacaaaaacaaattaacgttaattaatcttttgctataaacatagcttatgcaagcttatacataagtg 45935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 15177253 - 15177349
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||  |||| ||||  || || ||||||||||| ||||||||||||| ||||| |||| ||  ||||||| |||||||||| ||||||    
T  15177253 gcttataaaaaccacttatagcacatagaagaacaatttaacgttattttatctttagctattaaaatagcttatgcaagcttatacatacgtgctt 15177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 39691188 - 39691252
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgc 96  Q
    ||||| ||||||||||||| |||| ||||| |||||||  | |||||||||||||||||||||||    
T  39691188 aatatagcttataaaaacaacttatagcatatacaaaacaattttaacattattttatcttttgc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 44797922 - 44797826
Alignment:
Q  21 ataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaa 117  Q
    |||||| ||| ||||  ||||||||||||| |||| ||| |  |||||| ||||||||| || ||||||||||||||||||||| ||  ||||||||    
T  44797922 ataagctctccaatacagcttataaaaacaacttatagcgtacacaaaatcaatttaacgttgttttatcttttgctataaaaatagcttatgcaaa 44797826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 25904268 - 25904327
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||| ||||  ||||||| ||||||||| ||||||||||||||||| ||||||    
T  25904268 aaaacagcttatagcaaatacaaaatcaatttaactttattttatcttttgctgtaaaaa 25904327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 19494927 - 19494837
Alignment:
Q  44 aaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||| |||||| ||||| ||||||||||||||| | |||||||||| ||||||||| ||  ||  |||| || |||||||||| ||||||    
T  19494927 aaaaatagcttagagcatatacaaaaacaatttagctttattttatcatttgctatagaactagcttatgtaaccttatacataggtgctt 19494837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 23319866 - 23319744
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgc 132  Q
    |||| |||||||||||||| ||| ||||| || |||||| |||||||  || |||||||||||||||| ||| ||   ||| || |||||  |||||||     
T  23319866 atatagcttataaaaacagtttatagcatatagaaaaactatttaactataatttatcttttgctatacaaacagctaatgtaagcttatgaataagtgt 23319767  T
Q  133 ttgtgctataaggtgcaaataag 155  Q
     ||| ||||||| ||||||||||    
T  23319766 gtgtactataagctgcaaataag 23319744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 403518 - 403481
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaa 103  Q
    |||||||||||||| |||||||||||||||||||||||    
T  403518 aaaaacaatttaacgttattttatcttttgctataaaa 403481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 29388633 - 29388564
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagag 107  Q
    ||||||||||||  ||||   ||| ||||||||||||||||| |||| |||||||||| |||||||||||    
T  29388633 gcttataaaaactacttatcacatctacaaaaacaatttaacgttatcttatcttttgttataaaaagag 29388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 54426034 - 54425945
Alignment:
Q  68 aaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagct 157  Q
    ||||||||||   |||||||||||  ||||| ||||  ||  ||||||| |||||||||||| ||||||| |||||| ||||||||||||    
T  54426034 aaacaatttagtgttattttatctgctgctacaaaagtagcttatgcaagcttatacataagcgcttgtgatataagctgcaaataagct 54425945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1706639 - 1706575
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||| ||||||||||| ||| | ||| ||||||||| |||||||||||| ||||| |||||||||    
T  1706639 ttatgaaaacagcttatagcttctacgaaaacaattgaacattattttaactttttctataaaaa 1706575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 9760465 - 9760393
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| ||||||||||||| |||| ||||| |  ||||| |||||||| |||||||||||||| | |||||||    
T  9760465 aatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttcaataaaaa 9760393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 17884105 - 17884025
Alignment:
Q  20 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||| ||| ||||| |||||| |||||| || | | | | ||||||||||||||||| ||||||||||||||| ||||    
T  17884105 cataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttgttata 17884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 20109027 - 20108963
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    ||||||||||||||||| | ||| ||||||||||| ||||| | |||||||||||| || |||||    
T  20109027 cttataaaaacagcttataccatatacaaaaacaacttaacttcattttatcttttcctctaaaa 20108963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 25885849 - 25885809
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaagag 107  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  25885849 aaaacaatttaactttattttatcttttgctatagaaagag 25885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 33587001 - 33587104
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgc 132  Q
    |||| ||||||||||||| | || | ||| |||||||||  || ||| || |||||||||| |||||||||| ||  ||||||| |||||||||||| ||    
T  33587001 atatagcttataaaaacaacctataacatatacaaaaacg-ttcaacgttgttttatctttcgctataaaaatagcttatgcaagcttatacataagcgc 33587099  T
Q  133 ttgtg 137  Q
    |||||    
T  33587100 ttgtg 33587104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 256920 - 256882
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  256920 aaaaacaatttaacattatattatcttttggtataaaaa 256882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 437515 - 437549
Alignment:
Q  70 acaatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||| ||||||||||||||||||||||||    
T  437515 acaatttaactttattttatcttttgctataaaaa 437549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 50662815 - 50662849
Alignment:
Q  70 acaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||||||||| |||||||||||    
T  50662815 acaatttaacattattttatcttatgctataaaaa 50662849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 51630130 - 51630068
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| |||| |||||| ||| | ||  ||||||||||||| ||||||||||||||||||||    
T  51630130 gcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttatcttttgctata 51630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 7601753 - 7601716
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  7601753 tacaaaaacaatttaactttattttatcctttgctata 7601716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 13216284 - 13216321
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  13216284 aaaacgatttaactttattttatcttttgctataaaaa 13216321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 23459646 - 23459581
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| ||||||||||| ||| | ||  ||||||| ||||| | ||||||||||||||||||||||    
T  23459646 cttatgaaaacagcttatagcttataagaaaacaacttaacttcattttatcttttgctataaaaa 23459581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 47119089 - 47119134
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||||||||| |||||||||| | || |||||||||    
T  47119089 ataagtgcttgtgctataagttgcaaataagttgtttatccaaaca 47119134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 52746891 - 52746948
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttg 95  Q
    |||||| |||||||||||  || |  |||||||||||||||| |||||||||||||||    
T  52746891 gcttatgaaaacagcttatggcttacacaaaaacaatttaactttattttatcttttg 52746948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 18425810 - 18425766
Alignment:
Q  59 catgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    ||||||||||||||||||||| |||||||| | ||||| ||||||    
T  18425810 catgtacaaaaacaatttaactttattttaccatttgccataaaa 18425766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 19039910 - 19039830
Alignment:
Q  21 ataagcactcaaatatggcttataaaaacagcttacagcat-gtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| ||| || || |||||||||||||| |||||||||  || |||||||||||||| | ||||||||| ||| ||||    
T  19039910 ataagctctccaagatagcttataaaaacaggttacagcatattaaaaaaacaatttaacttcattttatctcttgttata 19039830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 27043883 - 27043943
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||| |||| ||| | ||| ||||||||||||| |||||||||| |||| ||||    
T  27043883 ttataaaaacatcttatagcttatacgaaaacaatttaactttattttatcctttgttata 27043943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 40174582 - 40174518
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaa 102  Q
    |||||| ||||||||||| ||| | ||  ||||||||||||| ||| ||||| ||||||||||||    
T  40174582 gcttatgaaaacagcttatagcttttatgaaaacaatttaactttaatttattttttgctataaa 40174518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 42500302 - 42500408
Alignment:
Q  64 acaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagctattcat 163  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||  ||||||| ||||||||| || |||||||||||||| || ||||||||| || ||    
T  42500302 acaaaaacaatttaactttattttatcttttgatataaaaatagcttatgcaagcttatacattagcgcttgtgctataagctggaaataagctgtttat 42500401  T
Q  164 ccaaaca 170  Q
    |||||||    
T  42500402 ccaaaca 42500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 16458034 - 16458120
Alignment:
Q  42 ataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||||||| |||| ||||| ||||||||||||||||  |||||||||||||||||||||||| ||  ||||||| |||||| |||||    
T  16458034 ataaaaacaacttatagcatatacaaaaacaatttaag-ttattttatcttttgctataaaaatagcttatgcaagcttatatataag 16458120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 34102362 - 34102421
Alignment:
Q  35 atggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    |||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||    
T  34102362 atggcttataaaaacaacttatagcatatacaaaaacaaattaacattattttatctttt 34102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 40426776 - 40426719
Alignment:
Q  46 aaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    |||||||||||||||  ||||||||||||||| | |||||||||||||||||||||||    
T  40426776 aaacagcttacagcaaatacaaaaacaatttagctttattttatcttttgctataaaa 40426719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 6521124 - 6521018
Alignment:
Q  37 ggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgt 136  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||| |||| | ||| ||||||||  ||| |||| || ||||| |||||| |||||     
T  6521124 ggcttataaaaacagcttacagcatatacaaaaataatttatcttta-tttaacattttctataaaagtagtttatgaaagcttatgcataagcgcttga 6521026  T
Q  137 gctataag 144  Q
    ||||||||    
T  6521025 gctataag 6521018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 16937928 - 16937990
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    ||||| || |||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||    
T  16937928 aatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatctttt 16937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 14932307 - 14932243
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| ||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||||||||    
T  14932307 cttataacaacagcttatagcttatacaaaa-caatttaactttattttatcttttgctataaaaa 14932243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 36227789 - 36227708
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataag 144  Q
    ||||||| |||||||||  ||||||||||||||||||||||| ||  || |||| |||||||||||| |  |||||||||||    
T  36227789 tacaaaatcaatttaacgctattttatcttttgctataaaaatagattaagcaagcttatacataagcggctgtgctataag 36227708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 41197638 - 41197577
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacata 127  Q
    ||||| ||||||||||| ||||||||| ||||||||||| | | ||||||||||||||||||    
T  41197638 aaaaataatttaacattcttttatcttatgctataaaaataatctatgcaaacttatacata 41197577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 13697838 - 13697876
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13697838 aaaaaaaatttaacattattttatcttttgctataaaaa 13697876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 24030556 - 24030602
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaacaa 171  Q
    |||||||||||||||||||| |||||||||||| || ||||||||||    
T  24030556 ataagtgcttgtgctataagctgcaaataagctgtttatccaaacaa 24030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 29925866 - 29925769
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| ||||||  ||||| |||| ||||  |||| ||||||||||||  ||||||||||||||||||||||| ||  ||||||| | ||||| ||||    
T  29925866 aatatagcttatgtaaacaacttatagcacatacagaaacaatttaacgctattttatcttttgctataaaaatagcttatgcaagcatatacttaag 29925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 35446049 - 35446008
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  35446049 tacaaaaacaatttaactttattttatcatttgctataaaaa 35446008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 15015840 - 15015750
Alignment:
Q  68 aaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgct---ataaggtgcaaataag 155  Q
    |||||||||||| |||||| | ||||||||| ||||| ||  ||||||| ||||||||||||  ||||||||   ||||| ||||||||||    
T  15015840 aaacaatttaacgttatttcaccttttgctacaaaaatagcttatgcaagcttatacataagcacttgtgctgtaataagctgcaaataag 15015750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 10639947 - 10639876
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||||||  | |||||||||||||||||| ||| ||  |||  | ||||||||||||||||||    
T  10639947 tacaaaaacaatttaatttaattttatcttttgctatagaaatagcttatatagacttatacataagtgctt 10639876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 12425583 - 12425528
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||| ||| | ||| ||||||||||||| |||||||||||||| |||||    
T  12425583 aaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactata 12425528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 25461698 - 25461787
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||||||||||| |||| | ||| ||| ||| |||||||||  ||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  25461698 gcttataaaaacaacttataacatatactaaaccaatttaacgatattt-atcttttgctataaaaatagcttatgcaagcttatatataa 25461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 3932761 - 3932802
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||| ||| | ||||||||||||||||||||||    
T  3932761 tacaaaaacaattaaacttcattttatcttttgctataaaaa 3932802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 11835267 - 11835230
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  11835267 aaaacaatttaactttattttatcttttgttataaaaa 11835230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 32372540 - 32372495
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||||||||| |||||||||| | || |||||||||    
T  32372540 ataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 32372636 - 32372591
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatc 90  Q
    ||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  32372636 aaaacagcttatagcatatacaaaaacaattcaactttattttatc 32372591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 36797158 - 36797199
Alignment:
Q  57 agcatgtacaaaaacaatttaacattattttatcttttgcta 98  Q
    ||||| || |||||||||||||| ||||||||||||||||||    
T  36797158 agcatatagaaaaacaatttaactttattttatcttttgcta 36797199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 465948 - 465916
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttg 95  Q
    ||||||||||||||||| |||||||||||||||    
T  465948 tacaaaaacaatttaactttattttatcttttg 465916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 32009717 - 32009645
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||||||||||  ||| ||||| ||||| ||||||| ||| | ||||||| |||| |||||||||    
T  32009717 aatatagcttataaaaacaatttatagcatatacaagaacaattcaacttcattttatgtttttctataaaaa 32009645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 32022020 - 32021968
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||| |||||| |||||||||||||  ||||||||| ||||| |||||||||    
T  32022020 cttatgcataagcgcttgtgctataatctgcaaataatctatttatccaaaca 32021968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 40439109 - 40439156
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaacaagc 173  Q
    ||||| ||||||| ||||||||||||||||||| || ||||||||||||    
T  40439109 ataagcgcttgtg-tataaggtgcaaataagctgtttatccaaacaagc 40439156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 39980754 - 39980652
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||| ||||||||||||| |||| ||||||| ||||||||||||||| ||||| ||| || ||||||||||| ||   |||||||||||||||||||||    
T  39980754 aatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttattgtatgttctgctataaaaaaagctaatgcaaacttatacataagtg 39980655  T
Q  132 ctt 134  Q
    |||    
T  39980654 ctt 39980652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 12862280 - 12862394
Alignment:
Q  19 acataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaac 118  Q
    |||||||  ||| ||||| |||||| |||||| |||| ||||| ||||||| ||||||||   ||||||||||||||||||||||| ||  ||||||| |    
T  12862280 acataagttctccaatatagcttatgaaaacaacttatagcatatacaaaa-caatttaaatctattttatcttttgctataaaaatagattatgcaagc 12862378  T
Q  119 ttatacataagtgctt 134  Q
    ||| ||||||||||||    
T  12862379 ttaaacataagtgctt 12862394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 20170537 - 20170446
Alignment:
Q  43 taaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||  |||||| ||  | ||||| || ||||||||| ||||    
T  20170537 taaaaacaacttatagcatatacaaaaacaatttaacattattttatcttttgcagtaaaaatagcttgtgcaagctgatacataagcgctt 20170446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 20880501 - 20880405
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| |||| ||||||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||||||||| ||  |||| || ||||||||||||    
T  20880501 aatatagcttttaaaaacagtttatagcatatacaaaaacaatttaac-ttgttttatcatttgctataaaaatagcttatgtaagcttatacataag 20880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 5331312 - 5331217
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||| |||| ||||  || || ||||||||||| ||||||| ||||||||||| |||| ||  ||||||| |||||||||||||||||    
T  5331312 gcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctat-aaaatagcttatgcaagcttatacataagtgctt 5331217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 29520530 - 29520625
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||| |||| ||||  || || ||||||||||| ||||||| ||||||||||| |||| ||  ||||||| |||||||||||||||||    
T  29520530 gcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctat-aaaatagcttatgcaagcttatacataagtgctt 29520625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 49034308 - 49034380
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| ||||||||||||| |||| ||||| | || ||||||||||||  |||||||||||||||||||||||    
T  49034308 aatatagcttataaaaacaacttatagcatatgcacaaacaatttaacggtattttatcttttgctataaaaa 49034380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 21335694 - 21335559
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatac-ataagtgc-ttg 135  Q
    |||||| |||||||||||||| || ||||||||||| | ||| |||||||||||||| ||||||||  ||  |||  || ||||| | ||||| || |||    
T  21335694 gcttatgaaaacagcttacagaatatacaaaaacaactaaactttattttatctttttctataaaattagcttatttaagcttatgctataagcgctttg 21335595  T
Q  136 tgctataaggtgcaaataagctattcatccaaacaa 171  Q
    || |||||| |||||||||||| || ||||||||||    
T  21335594 tgatataagttgcaaataagctgtttatccaaacaa 21335559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 24684869 - 24684958
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttat 122  Q
    |||| |||||||||| || |||| ||||| ||||||||||||| ||  |||||||||||||| ||||||||| ||  |||| ||||||||    
T  24684869 atattgcttataaaagcaacttatagcatatacaaaaacaattaaaatttattttatctttttctataaaaatagcttatgtaaacttat 24684958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 30956684 - 30956773
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||| |||| ||| | ||||||||||||||||| |||||||||||||||||||| ||| ||  |||| || ||||| ||||| |||||    
T  30956684 aaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgctt 30956773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 30972496 - 30972585
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||| |||| ||| | ||||||||||||||||| |||||||||||||||||||| ||| ||  |||| || ||||| ||||| |||||    
T  30972496 aaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgctt 30972585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 35959501 - 35959598
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| ||||||| ||||| |||||||||| |||||||| |||||||| |||||||||| ||| ||||| ||| ||  ||||  | ||||||||||||    
T  35959501 aatatagcttatagaaacaacttacagcatatacaaaaataatttaactttattttatccttttctatagaaatagcttatgtgagcttatacataag 35959598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 10704649 - 10704689
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  10704649 tacaaaaacaatttaacatcattttatcttttgctataaaa 10704689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 36189584 - 36189528
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttg 95  Q
    |||||||||| |||||| | ||| ||||||||||||||||| |||||||||||||||    
T  36189584 cttataaaaatagcttatatcatatacaaaaacaatttaactttattttatcttttg 36189528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 36631096 - 36631164
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| ||| ||||||||| |||| ||||||||||||||||||||||| ||| |||||| ||| |||||    
T  36631096 aatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatcctttactata 36631164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 1508656 - 1508728
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctat-aaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||| | ||||||||| |||||||||||||||| | ||||| ||| ||||||| |||||||||||| ||||    
T  1508656 tacaaatataatttaacaatattttatcttttgctttaaaaaatagtttatgcaagcttatacataagcgctt 1508728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 30443910 - 30443858
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctt 92  Q
    |||||||||||||||| ||||| ||||||| ||||||||| | ||||||||||    
T  30443910 ttataaaaacagcttatagcatatacaaaagcaatttaacttcattttatctt 30443858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 49092804 - 49092736
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| ||||||||||||| |||||||||| ||| | || |||||||  | ||||||||||||||||||    
T  49092804 aatatagcttataaaaacaacttacagcatatacgagaataatttaatttaattttatcttttgctata 49092736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 20257572 - 20257505
Alignment:
Q  20 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatttt 87  Q
    ||||||| ||| ||||| ||||  ||||||| |||| ||||| ||||||||||||||||| |||||||    
T  20257572 cataagctctccaatatagcttcaaaaaacaacttatagcatatacaaaaacaatttaactttatttt 20257505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 44061081 - 44061136
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| |||| ||| | || |||||||||||||| ||||||||||||||||||||    
T  44061081 aaaacaacttatagcttatagaaaaacaatttaaccttattttatcttttgctata 44061136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 47249612 - 47249659
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 172  Q
    ||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  47249612 ataagtgcttgtgttataagctgcaaataagctatttatccacacaag 47249659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 4401059 - 4400973
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaaga-gtgtatgcaaacttatacataagt 130  Q
    |||||| |||| ||||| ||| |||| |||||||| |||||| | |||||| |||||||| | |  |||||||||||||||||||||    
T  4401059 aaaacaacttatagcatatacgaaaataatttaacgttatttcaccttttggtataaaaaaaagcttatgcaaacttatacataagt 4400973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 25447295 - 25447357
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| ||||||| ||| ||| | ||||||||||||||||  |||||||||||||| |||||    
T  25447295 gcttatgaaaacagtttatagcttatacaaaaacaatttaagtttattttatcttttactata 25447357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 14145931 - 14145866
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    |||||| |||| | |||| ||||| ||| ||||||||||||| |||||||||||| || |||||||    
T  14145931 gcttatgaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttataaaa 14145866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 44747550 - 44747591
Alignment:
Q  129 gtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||||||| |||||| ||||||||||||||| |||||||||    
T  44747550 gtgcttgtgttataagttgcaaataagctatttatccaaaca 44747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 47132293 - 47132248
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||||||||||||||||||||| ||||||| | || |||||||||    
T  47132293 ataagtgcttgtgctataaggtgaaaataagttgtttatccaaaca 47132248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 51929439 - 51929544
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaa-cttatacataagtgcttgtgctataaggtgcaaataagctattcatc 164  Q
    |||||||||||||   ||||||||||||||||||||||| |   |||||||| ||||||||||||  ||| | ||||||  || ||||||||| || |||    
T  51929439 aaaaacaatttaatgctattttatcttttgctataaaaatatcttatgcaaagcttatacataagcacttatactataaactggaaataagctgtttatc 51929538  T
Q  165 caaaca 170  Q
     |||||    
T  51929539 gaaaca 51929544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 584051 - 584003
Alignment:
Q  52 cttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||| |||||| |||||||||||||||| |||||||||| ||| |||||    
T  584051 cttatagcatgaacaaaaacaatttaactttattttatcattttctata 584003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 18405882 - 18406017
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaattt-aacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgt 136  Q
    |||||| |||||| |||| ||||| |||||||| || || |||  ||||||||||||| ||||| ||| |   |||| || |||||||||||| |||| |    
T  18405882 gcttatgaaaacaacttatagcatatacaaaaaaaaattcaacgatattttatcttttcctatataaataacttatgtaagcttatacataagcgcttct 18405981  T
Q  137 g--ctataaggtgcaaataagctattcatccaaaca 170  Q
       ||||||| |||||||||||| || |||||||||    
T  18405982 caactataagttgcaaataagctgtttatccaaaca 18406017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 35959610 - 35959658
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaacaagc 173  Q
    ||||| ||||||| |||||| |||||||||||| || ||||||||||||    
T  35959610 ataagagcttgtgatataagctgcaaataagctgtttatccaaacaagc 35959658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 37689246 - 37689161
Alignment:
Q  42 ataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||||||| | || ||||| ||||||||||||||  | |||||||||||||||||||| ||| ||  ||||  ||||||||| ||||    
T  37689246 ataaaaacaacctatagcatatacaaaaacaattt--ctttattttatcttttgctatagaaatagcttatgtgaacttatacgtaag 37689161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 42747898 - 42747950
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||| | | |||||||||||| |||||||||||| || |||||||||    
T  42747898 cttatacataggcgtttgtgctataagttgcaaataagctgtttatccaaaca 42747950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 32592611 - 32592510
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||| ||||||||||||| |||| ||| | ||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||| |    
T  32592611 aatattgcttataaaaacaacttatagcgtatacaaaa-caatttaacattattttatctttttctataaaaatagtttatgcaagcttatacataagcg 32592513  T
Q  132 ctt 134  Q
    |||    
T  32592512 ctt 32592510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 20933780 - 20933678
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||| ||||| ||||||| |||| ||||| || | || ||||||||||||||||||||||||| | |||||| ||  ||||||| | ||||||||||||    
T  20933780 aatatagcttagaaaaacaacttagagcatatatagaagcaatttaacattattttatcttttgttgtaaaaatagattatgcaagcctatacataagtg 20933681  T
Q  132 ctt 134  Q
    |||    
T  20933680 ctt 20933678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 39659554 - 39659655
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||| |||||||||||||  ||| | |||  |||||||||||||||| ||||| ||||||||| ||| |||| ||||||| |||||||||||||||| |    
T  39659554 aatatagcttataaaaacaagttataacatagacaaaaacaatttaacgttattgtatcttttgttat-aaaatagtgtatccaaacttatacataagcg 39659652  T
Q  132 ctt 134  Q
    |||    
T  39659653 ctt 39659655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 43279574 - 43279661
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaactta 121  Q
    ||||| ||||||||||||| |||| |||||  ||||||||||||| |||||||||||||||||| |||||||| ||  ||||||| ||||    
T  43279574 aatatagcttataaaaacaacttatagcat--acaaaaacaatttcacattattttatcttttgatataaaaatagcttatgcaagctta 43279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 41812160 - 41812284
Alignment:
Q  57 agcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagc 156  Q
    ||||| ||||||||||||||||| | |||||| | ||||| ||||||| ||  |||| || |||||||||||   ||||||||||||  ||||||||||     
T  41812160 agcatatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataatcacttgtgctataaactgcaaataagt 41812259  T
Q  157 tattcatccaaacaagcactaaatc 181  Q
    | || ||||||||| || |||||||    
T  41812260 tgtttatccaaacaggccctaaatc 41812284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 36125172 - 36125086
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaa 150  Q
    ||||||||||| || | |||||||||||||||||||| |||| ||  ||||||| |||||  |||||||||||||||||||| |||||    
T  36125172 tacaaaaacaagttgaaattattttatcttttgctattaaaatag-ctatgcaatcttatttataagtgcttgtgctataagctgcaa 36125086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 15305651 - 15305589
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttataca 125  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||  ||||||| ||||||||    
T  15305651 tacaaaaataatttaacattattttatcatttgctataaaaatagcttatgcaagcttataca 15305589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 42420370 - 42420411
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  42420370 tacaaaaacaatttaacgttattttatcttttgctataaaaa 42420411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 45229506 - 45229401
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgct-----tgtgctataaggtgcaaataagct 157  Q
    ||||||||||||||||| | |||||||| ||||||||| ||| ||  |||| |||||||||||||||  ||     ||| ||||||| ||||||||||||    
T  45229506 tacaaaaacaatttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatgtactataagctgcaaataagct 45229407  T
Q  158 attcat 163  Q
    ||||||    
T  45229406 attcat 45229401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 12464524 - 12464580
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    |||||| |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  12464524 gcttatgaaaatagcttatagcatatacaaaaacaatttaactttattttatctttt 12464580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 41407320 - 41407224
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaa-caatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||||||| | |||| ||||| |||||||| ||||||||| ||||||||||||||| || | ||| ||  |||| || |||||||||||||||||    
T  41407320 cttataaaaataacttatagcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttatgtaagcttatacataagtgctt 41407224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 39073734 - 39073796
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    ||||| |||||||||||   |||| ||||| ||||||||||||||||| ||||||||||||||    
T  39073734 aatatagcttataaaaattacttatagcatatacaaaaacaatttaacgttattttatctttt 39073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 42868537 - 42868603
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||||||||||||||| |||||||||||||| |||| |||| ||  |||| |||||||| ||||||    
T  42868537 tacaaaaacaatttaactttattttatctttttctatgaaaatagcttatgtaaacttatgcataag 42868603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 38916352 - 38916453
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgc 132  Q
    |||| |||| ||||||||| ||| | ||| ||||||||||||||||| ||||||||||||| | ||||  || |   |||  ||||||||||||||||||    
T  38916352 atatagcttctaaaaacagtttaaaacatatacaaaaacaatttaactttattttatctttagttataggaaaaacttatataaacttatacataagtgc 38916451  T
Q  133 tt 134  Q
    ||    
T  38916452 tt 38916453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 26202046 - 26201951
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatct-tttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||||||||| |||| |||| |||| | | ||||||||| ||||||||||| ||||||||||||| ||  ||||||| |||||| ||||| ||||    
T  26202046 cttataaaaacaacttatagca-gtacgagaccaatttaacgttattttatctctttgctataaaaatagcttatgcaagcttatatataagggctt 26201951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 2416331 - 2416272
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgcta 98  Q
    ||||||||||||||||| ||| | ||  ||||||||||||| | ||||||||||||||||    
T  2416331 cttataaaaacagcttatagcttatatcaaaacaatttaacttcattttatcttttgcta 2416272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 4026809 - 4026770
Alignment:
Q  65 caaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  4026809 caaaaataatttaactttattttatcttttgctataaaaa 4026770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 41851547 - 41851492
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| |||| ||||| ||||||||||||||||| ||||| |||||||| |||||    
T  41851547 aaaacaacttatagcatatacaaaaacaatttaactttattgtatcttttcctata 41851492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 41875704 - 41875759
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttt 93  Q
    |||||| ||||||||||||||| | ||| ||||||| ||||||| |||||||||||    
T  41875704 gcttatgaaaacagcttacagcttatacgaaaacaacttaacatcattttatcttt 41875759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 1875131 - 1875082
Alignment:
Q  52 cttacagcatgtacaaaaacaatttaacattattttatcttttgctataa 101  Q
    |||||| ||| ||||||| ||||||||  |||||||||||||||||||||    
T  1875131 cttacaacatatacaaaagcaatttaatgttattttatcttttgctataa 1875082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 3611220 - 3611183
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  3611220 tacaaaaacaatttaactttattttaccttttgctata 3611183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 6541784 - 6541817
Alignment:
Q  71 caatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||||||||||||||||| |||||||||    
T  6541784 caatttaacattattttatcttttactataaaaa 6541817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 10490647 - 10490582
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||| |||| ||||| |||| |||||||||||| |||||||| | |||||||| ||||    
T  10490647 cttatgaaaacaccttatagcatatacagaaacaatttaacgttattttaccatttgctatcaaaa 10490582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 36114413 - 36114372
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| |||||||||||||||  |||||||    
T  36114413 tacaaaaacaatttaactttattttatcttttgtcataaaaa 36114372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 36114599 - 36114636
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  36114599 tacaaaaacaatttaactttattttatcttttgttata 36114636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 41241197 - 41241274
Alignment:
Q  52 cttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||| ||||| ||||||||||||||||| | |||||||||||| ||||| ||| ||  |||| || ||||| ||||||    
T  41241197 cttatagcatatacaaaaacaatttaacttcattttatcttttcctatagaaatagcttatgtaagcttatccataag 41241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 43570342 - 43570297
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||||||||| |||||||||||| || | |||||||    
T  43570342 ataagtgcttgtgctataagctgcaaataagctgtttacccaaaca 43570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 2981787 - 2981735
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||| ||||||||||||| ||||||| || ||||||||| || |||||||||    
T  2981787 cttatgcataagtgcttgttctataagctgtaaataagctctttatccaaaca 2981735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 7988287 - 7988227
Alignment:
Q  44 aaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||||| ||||| || |||||||||||| ||||| ||||  |||| |||||||||    
T  7988287 aaaaacagcttatagcatataaaaaaacaatttagcattagtttacatttttctataaaaa 7988227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 11201439 - 11201499
Alignment:
Q  44 aaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| |||| || || |||||||||||||| || ||||||||||||||  ||||||||    
T  11201439 aaaaacaacttatagtatatacaaaaacaattttaccttattttatcttttaatataaaaa 11201499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 28206292 - 28206220
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||||||||||  ||| | ||| || ||||| ||||||||||  |||||||||||| ||||||||    
T  28206292 aatatagcttataaaaacaatttataacatataaaaaaataatttaacatcgttttatcttttgatataaaaa 28206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 42457941 - 42457905
Alignment:
Q  64 acaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||||||||||||| |||||||||||||| |||||    
T  42457941 acaaaaacaatttaactttattttatcttttactata 42457905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 18076221 - 18076119
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtg 131  Q
    ||||| ||||||||||||| |||| ||||  || |||||||||||||| ||||||| |||||||||||||||| |   ||||||| ||||||||||||||    
T  18076221 aatatagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtg 18076122  T
Q  132 ctt 134  Q
    |||    
T  18076121 ctt 18076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 30536472 - 30536406
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||||||||||||||||||||||||| |||||||||| || ||  ||||||||||||||||||||    
T  30536472 tacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataag 30536406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 30536637 - 30536730
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgt--gctataaggtgcaaataagct 157  Q
    |||||||||||||| |||| ||||||||||||||||||| ||  ||||||| ||||||||||||  |||||  | |||||| ||||||||||||    
T  30536637 aaaaacaatttaacgttatcttatcttttgctataaaaatagcttatgcaagcttatacataagcacttgtgggttataagctgcaaataagct 30536730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 6538433 - 6538388
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  6538433 ataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 8147727 - 8147655
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||| |||||| |||  || || ||||||||||||| ||| ||||||||||||||||||||||||    
T  8147727 aatatagcttatgaaaacatcttttagaatatacaaaaacaattcaactttattttatcttttgctataaaaa 8147655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 9093607 - 9093669
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| ||||||||||| ||| | ||| ||||||||||||| ||||||||||||||| ||||    
T  9093607 gcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatata 9093669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 4163193 - 4163128
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||| |||||| | ||| |||| |||||||||||| ||||||||||| || |||||||||    
T  4163193 cttataaaaatagcttataacatatacacaaacaatttaactttattttatctatttctataaaaa 4163128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 4224814 - 4224749
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||| |||||| | ||| |||| |||||||||||| ||||||||||| || |||||||||    
T  4224814 cttataaaaatagcttataacatatacacaaacaatttaactttattttatctatttctataaaaa 4224749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 12836217 - 12836314
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| ||||||||| ||  |||||| ||| || ||||| |||||||||||||||||| ||||||| |||||   |  ||||||| ||||||||||||    
T  12836217 aatatagcttataaagaccacttacaacatatagaaaaataatttaacattattttatattttgctttaaaagttgcttatgcaagcttatacataag 12836314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28621186 - 28621227
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  28621186 tacaaaaacaatttaactttattttatcttttgttataaaaa 28621227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3785751 - 3785811
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgcta 98  Q
    ||||| |||||||||||| ||| | ||| |||||| |||||| ||||||||||||||||||    
T  3785751 gcttacaaaaacagcttatagcttatacgaaaacagtttaactttattttatcttttgcta 3785811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 24626314 - 24626223
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||| |||||| |||| || || ||||||||||||||||| || ||||||| ||| ||||| ||| ||  |||| || ||||||||||||    
T  24626314 gcttatgaaaacaacttatagaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataag 24626223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 31623576 - 31623513
Alignment:
Q  41 tataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||| |||||  |||| | ||||||||| | |||||||||||| |||||||||    
T  31623576 tataaaaacagcttatagcatacacaagagcaatttaacgtcattttatctttttctataaaaa 31623513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 2735088 - 2735026
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| ||||||||||| ||  | |||||||| |||||||| ||||||||||||||| ||||    
T  2735088 gcttatgaaaacagcttatagattatacaaaaataatttaactttattttatcttttgttata 2735026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 6200576 - 6200482
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||||||||  ||| ||||| |||||||| |||| | |||||||||| ||||| ||||||||  ||  ||| ||||||||| |||||| ||||    
T  6200576 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctt 6200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11784075 - 11784121
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaa 78  Q
    ||||| |||||| ||||||||||| ||||| ||||||||||||||||    
T  11784075 aatatagcttatgaaaacagcttatagcatatacaaaaacaatttaa 11784121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 6538537 - 6538485
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattat 84  Q
    ||||| || |||||||||| |||| ||||| |||| |||||||||||||||||    
T  6538537 aatatagcctataaaaacaacttatagcatatacataaacaatttaacattat 6538485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 14492320 - 14492256
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    ||||| ||||||||||| ||| ||||  |||||||||| || | ||||||||||||| |||||||    
T  14492320 cttatgaaaacagcttatagcttgtatcaaaacaatttgacttcattttatcttttggtataaaa 14492256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 45806528 - 45806624
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||| |||| ||||  || |||||||||||||| ||||||| |||||||||||||| | ||  ||||||| |||||||||||||||||    
T  45806528 gcttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttatacataagtgctt 45806624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 420371 - 420289
Alignment:
Q  46 aaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||| | ||  ||||||| |||||||||||    
T  420371 aaacaacttatagcatatacaaaaacaattgaacattattttatcttttgctataaacatagcttatgcaagcttatacataa 420289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 20258524 - 20258465
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  20258524 aaaacaacttatagcaattacaaaaacaatttaacattattttatcttttgctataaaaa 20258465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 33266535 - 33266650
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtg 137  Q
    ||||||||||| | |||| || ||||| |||| ||||||||| |||||||||| ||||||||| ||| ||  | ||  | |||||||||||||||||||     
T  33266535 gcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgctatataaatagcttttgtgagcttatacataagtgcttgta 33266634  T
Q  138 ctataaggtgcaaata 153  Q
    ||||||| ||||||||    
T  33266635 ctataagctgcaaata 33266650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 20526465 - 20526403
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||| ||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||    
T  20526465 gcttatgaaaacagcttatagcatgtacaaacataatttaactttattttatcttttgctata 20526403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 45338462 - 45338334
Alignment:
Q  44 aaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttat--acataagtgcttgtgctat 141  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||| ||||||||| |||| |   ||||||| |||||  | |||| || |||||||||    
T  45338462 aaaaacaacttacagcatatacaaaaacaatttaaggttattttattttttgctatgaaaataacttatgcaagcttattaagataaatgtttgtgctat 45338363  T
Q  142 aaggtgcaaataagctattcatccaaaca 170  Q
    ||| |||| || |||| || |||||||||    
T  45338362 aagctgcatatgagctgtttatccaaaca 45338334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 21568708 - 21568775
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||| ||||||| ||| |||||||||||||||||| ||  ||||||| |||||||||||||||||    
T  21568708 aaaacaagttaacatcattctatcttttgctataaaaatagcttatgcaagcttatacataagtgctt 21568775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 45264110 - 45264048
Alignment:
Q  42 ataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| |||||| ||||| ||||||||||||||||| |||||| ||||||| |||||||||    
T  45264110 ataaaaatagcttatagcatatacaaaaacaatttaactttatttcatctttttctataaaaa 45264048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 34083577 - 34083638
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| ||||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||    
T  34083577 cttatgaaaacagcttatagcttatacacaaacaatttaactttattttatcttttgctata 34083638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 23989578 - 23989626
Alignment:
Q  81 ttattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  23989578 ttattttatcttttactataaaaatagtttatgcaaacttatacataag 23989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 48507744 - 48507648
Alignment:
Q  35 atggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatt-ttatcttttgctataaaaagagtgtatgcaaacttatacataagt 130  Q
    ||||||||| ||||||| ||| ||||| ||||||||||||||||| | ||| ||||||||||||||| ||| ||  || | |||||| |||||||||    
T  48507744 atggcttatgaaaacagtttatagcatatacaaaaacaatttaacttcattcttatcttttgctatagaaacagcttacgtaaacttttacataagt 48507648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 119928 - 119873
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    |||||||||||| |||| ||||| |||| |||||||||||| ||||||||||||||    
T  119928 cttataaaaacaacttatagcatttacacaaacaatttaactttattttatctttt 119873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 20269588 - 20269529
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||| |||| | ||| ||||||||||||||||| || |||||||||||||||||||||    
T  20269588 aaaacaacttataacatttacaaaaacaatttaactttgttttatcttttgctataaaaa 20269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 30180064 - 30180009
Alignment:
Q  44 aaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctat 99  Q
    |||||||||||| ||| | ||| ||||||||||||| |||||||||||||||||||    
T  30180064 aaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgctat 30180009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 45004758 - 45004707
Alignment:
Q  65 caaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaa 116  Q
    |||| |||||||||| |||||||||||||||||||||||| ||| |||||||    
T  45004758 caaatacaatttaactttattttatcttttgctataaaaatagtttatgcaa 45004707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 19302610 - 19302700
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||||||||||| |||| | ||| ||||||||||||||||| ||| | |||||| |||| |||||| ||  ||||||||| |||| ||||    
T  19302610 gcttataaaaacaacttataacatatacaaaaacaatttaacgttactatatcttctgctgtaaaaatagcttatgcaaacatatatataa 19302700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 45806408 - 45806462
Alignment:
Q  69 aacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttata 123  Q
    ||||||||||| |||||||||||||||||||||||| ||  ||||||| ||||||    
T  45806408 aacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttata 45806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 46280317 - 46280363
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaa 78  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  46280317 aatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 33678799 - 33678738
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctat 99  Q
    |||||| ||||||||||| ||| | ||||||||| ||||||| ||| |||||||||||||||    
T  33678799 gcttatgaaaacagcttatagcttttacaaaaaccatttaactttactttatcttttgctat 33678738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 43694616 - 43694661
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaa 78  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  43694616 atatagcttataaaaacagcttatagcatatacaaaaacaatttaa 43694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 11700307 - 11700383
Alignment:
Q  28 ctcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| | ||||||||||  ||||||  |||| || ||||||||| |||| |||||||||||||| |||||||||    
T  11700307 ctcaaatttagcttataaaagaagcttattgcatatataaaaacaatgtaactttattttatctttttctataaaaa 11700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 38138524 - 38138620
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||| ||| ||||||||| |||| ||||| ||||||| |||| |||| ||| |||||||| | ||||||||| ||  ||| ||| |||||||||||    
T  38138524 aatatagctaataaaaacaacttatagcatatacaaaatcaatgtaacgttactttatcttatactataaaaatagcttatccaaccttatacataa 38138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 9210646 - 9210556
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||| |||||| |||| ||||| || ||||| |||||||||| ||||||| |||| ||||||||  ||  ||||||| ||||||||||||    
T  9210646 gcttattaaaacaacttatagcatata-aaaaagaatttaacatcattttatttttttctataaaagtagcttatgcaagcttatacataag 9210556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 20234495 - 20234436
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||| |||| ||||  ||||||||||||||||   |||||||||||||||||||||||    
T  20234495 aaaacaacttatagcaattacaaaaacaatttaattatattttatcttttgctataaaaa 20234436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 39393725 - 39393764
Alignment:
Q  131 gcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  39393725 gcttgtgctataagctgcaaataagctgttcatccaaaca 39393764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 46078141 - 46078070
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||||||| || ||||||||||| ||||||||| |   |||| || |||||||||||| ||||    
T  46078141 tacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcgctt 46078070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 4970845 - 4970929
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    |||||||||| | |||| ||||| ||||||||||||||     ||||||||||||||||||| ||| ||  |||| || |||||||||||    
T  4970845 cttataaaaagaacttatagcatatacaaaaacaattt-----tattttatcttttgctatagaaatagcttatgtaagcttatacataa 4970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 8960703 - 8960740
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  8960703 tacaaaaacaatttaactttattttatcatttgctata 8960740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28613610 - 28613651
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| || |||||||||||| ||||||||    
T  28613610 tacaaaaacaatttaactttgttttatcttttgttataaaaa 28613651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 31247604 - 31247665
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatac 124  Q
    ||||||| ||||||| | |||||| ||||||||||||||||| ||  ||||||| |||||||    
T  31247604 tacaaaaccaatttatcgttatttcatcttttgctataaaaatagcttatgcaagcttatac 31247665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39279781 - 39279720
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| ||| ||||||| || || ||||||| ||||||||| || |||||||||||||||||    
T  39279781 cttatgaaaccagcttatagaatatacaaaagcaatttaactttgttttatcttttgctata 39279720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 39907752 - 39907715
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataag 155  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  39907752 cttatacataagtgcttatgctataagctgcaaataag 39907715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 39967939 - 39967878
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctat 99  Q
    |||||| |||||| |||| |||  |||| ||||||||||||  |||||||||||||||||||    
T  39967939 gcttatgaaaacaacttatagctagtacgaaaacaatttaagtttattttatcttttgctat 39967878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 48140192 - 48140139
Alignment:
Q  81 ttattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||||| |||||||| ||  ||||||| |||||||||||| ||||    
T  48140192 ttattttatcttttgttataaaaatagcttatgcaagcttatacataagcgctt 48140139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 48469966 - 48469921
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||||| |||||||||||| |||||||||||| |||| |||||||    
T  48469966 ataagtgtttgtgctataagctgcaaataagctgttcacccaaaca 48469921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 44216830 - 44216894
Alignment:
Q  42 ataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaaga 106  Q
    ||||||| ||| || ||||| | ||||||  ||||||| |||||||||||||||||||| |||||    
T  44216830 ataaaaatagcctatagcatatccaaaaattatttaactttattttatcttttgctatagaaaga 44216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 16825614 - 16825720
Alignment:
Q  64 acaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagctattcat 163  Q
    ||||||||||||||||||||||||||| ||| |||||| || ||  |||||||  ||||||||||| |||||| ||||||| || ||||||| | || ||    
T  16825614 acaaaaacaatttaacattattttatcctttactataagaatagcttatgcaaggttatacataagcgcttgttctataagctggaaataagtttttaat 16825713  T
Q  164 ccaaaca 170  Q
    |||||||    
T  16825714 ccaaaca 16825720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 29168950 - 29169075
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataag 144  Q
    ||||||||||| | ||| |||||||| |||||||  | |||||||||||||||||| ||| ||| | ||  | | |||||||||| ||||||||||||||    
T  29168950 aaaacagcttataacatatacaaaaataatttaatttaattttatcttttgctatagaaacagtttttgtgagcctatacataagcgcttgtgctataag 29169049  T
Q  145 gtgcaaataagctattcatccaaaca 170  Q
     |||| ||||||| || |||||||||    
T  29169050 ctgcagataagctctttatccaaaca 29169075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 12497292 - 12497372
Alignment:
Q  48 acagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||  |  ||||||| |||||||||||    
T  12497292 acagcttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 38750382 - 38750281
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgc 132  Q
    |||| ||||||||||||| |||| | ||| |||||||||| |||||||||||||| ||| |  ||||||||| ||  ||||||| |||||||||||| ||    
T  38750382 atatagcttataaaaacaacttatatcatatacaaaaacattttaacattattttttctctgcctataaaaatagcttatgcaagcttatacataagcgc 38750283  T
Q  133 tt 134  Q
    ||    
T  38750282 tt 38750281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 10758301 - 10758397
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||| ||||||||| ||| |||| ||||| ||||||||||||||||| |||||||||  ||||||||| ||| ||| || |  | |||||||||||    
T  10758301 aatatagcttataaagacaacttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 42043396 - 42043492
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||||| |||||| |||| | ||| | |||||||||||||||   |||||||||||||||||| ||| ||  |||| || |||||||||||||||||    
T  42043396 gcttatgaaaacaacttatatcatatccaaaaacaatttaactgcattttatcttttgctatagaaatagcatatgtaagcttatacataagtgctt 42043492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 1058132 - 1058221
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    |||| |||||| ||||| ||||||||||  ||||| |||||||||  ||||||||||||| ||  |||| || |||||||||||| ||||    
T  1058132 aaaatagcttatagcatatacaaaaacagattaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcgctt 1058221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 14956373 - 14956442
Alignment:
Q  65 caaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||||  |||||| ||||||| | ||||||| ||  ||||||| |||||||||||||||||    
T  14956373 caaaaacaatttaatgttatttcatcttttacaataaaaatagcttatgcaagcttatacataagtgctt 14956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 16734047 - 16733986
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| |||||| |||| ||||| ||||||||||||||||  ||| ||||||||||||||||    
T  16734047 cttatcaaaacaacttatagcatatacaaaaacaatttaagtttagtttatcttttgctata 16733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 38602352 - 38602288
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaa 103  Q
    |||||||||||||||||| ||||| | ||||| ||||||||| | |||||||||||| ||||||||    
T  38602352 gcttataaaaacagcttatagcatatgcaaaagcaatttaacttcattttatctttt-ctataaaa 38602288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 11861823 - 11861708
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtg 137  Q
    ||||||||||||| |||| ||||| ||||||||    ||||| ||||||| |  ||||||||| ||| ||  ||||  | |||||||||||||| ||||     
T  11861823 gcttataaaaacaacttatagcatatacaaaaaa---ttaactttattttgttctttgctatagaaatagcttatgtgagcttatacataagtgtttgtt 11861727  T
Q  138 ctataaggtgcaaataagc 156  Q
    ||||||| |||||||||||    
T  11861726 ctataagctgcaaataagc 11861708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 16736101 - 16736037
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| ||| |||| | ||||||||||||| ||||||  ||||||||||||||||||| ||||    
T  16736101 ttataaagacaacttataacatgtacaaaaactatttaatgttattttatcttttgctatcaaaa 16736037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 37353282 - 37353361
Alignment:
Q  20 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||| |||||| || |||||  ||||||||||| |||||  |||||||||||||||| ||| ||||||||||| ||||    
T  37353282 cataagctctcaaagatagcttaagaaaacagcttatagcatacacaaaaacaatttaacttta-tttatcttttgttata 37353361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 26771283 - 26771233
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttat 89  Q
    |||||||||| |||||| ||||| ||||||||||||||||  |||||||||    
T  26771283 cttataaaaaaagcttatagcatatacaaaaacaatttaagtttattttat 26771233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 35749661 - 35749711
Alignment:
Q  84 ttttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| || |||||    
T  35749661 ttttatcttttgctatagaaatagtctatgcaaacttatacaaaaatgctt 35749711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 25930605 - 25930738
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgc-ttgt 136  Q
    |||||| ||||||  ||| ||||| |||||||||| |||||  |||||| ||| ||| ||||| ||| ||  |||| || |||||||||||| ||  |||    
T  25930605 gcttatgaaaacaatttaaagcatatacaaaaacattttaattttatttcatcctttcctatagaaatagcttatgtaagcttatacataagagcgctgt 25930704  T
Q  137 gctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||| | |||||||| | || |||||||||    
T  25930705 gctataagcttcaaataagttctttatccaaaca 25930738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 35534687 - 35534727
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  35534687 tacaaaaacaatttaactttattttatctttt-ctataaaaa 35534727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 38353330 - 38353278
Alignment:
Q  76 taacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||||||||||||||||||| ||||||| ||  ||||||| ||||||||||||    
T  38353330 taacattattttatcttttgc-ataaaaatagcttatgcaagcttatacataag 38353278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 40981046 - 40981001
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||| |||||||||||||| |||||||||||| || |||||||||    
T  40981046 ataagcgcttgtgctataagctgcaaataagctgtttatccaaaca 40981001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 42237502 - 42237539
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  42237502 aaaacaatttaactttattttatcttttgttataaaaa 42237539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 1930002 - 1929946
Alignment:
Q  116 aacttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 172  Q
    |||||||||||||| |||||||||||||| ||||| |||| | || ||| |||||||    
T  1930002 aacttatacataagcgcttgtgctataagctgcaagtaagttgtttatcaaaacaag 1929946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 10114514 - 10114447
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||| ||| || ||||||||||| ||| | ||| ||||||||| ||| ||||||||||||||||||||    
T  10114514 aatatagctaatgaaaacagcttatagcttataccaaaacaattcaac-ttattttatcttttgctata 10114447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 29205813 - 29205765
Alignment:
Q  52 cttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||| ||||| ||||||||||||||||| | |||||||||||| |||||    
T  29205813 cttatagcatatacaaaaacaatttaacttcattttatctttttctata 29205765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 32976036 - 32975988
Alignment:
Q  81 ttattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||||||||||||||||||||| ||  ||||||| |||||| |||||    
T  32976036 ttattttatcttttgctataaaaatagcttatgcaagcttatatataag 32975988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 35644061 - 35644149
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataag 155  Q
    |||||||||||||  || |||||||||||| | ||||| ||  || |||| |||||||||||| | ||||| || || |||||||||||    
T  35644061 aaaacaatttaacggtaatttatcttttgccagaaaaatagcttaagcaagcttatacataagcgtttgtgataaaaagtgcaaataag 35644149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 41475140 - 41475176
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaa 103  Q
    |||||||||||||  ||||||||||||||||||||||    
T  41475140 aaaacaatttaactgtattttatcttttgctataaaa 41475176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 41821544 - 41821480
Alignment:
Q  70 acaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||  | ||||||||| |||||| || || ||| |||| |||||||||||||||||    
T  41821544 acaatttaacatagtattatctttttctataataacagcgtacgcaagcttatacataagtgctt 41821480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 14385808 - 14385905
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    ||||| ||||| ||||||| |||| | ||  ||||||||||||||||||||||| |||||||||||||||||| ||| | ||| | ||||||||||||    
T  14385808 aatatagcttacaaaaacaacttataacagatacaaaaacaatttaacattattctatcttttgctataaaaatagtttctgccagcttatacataag 14385905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 30581993 - 30582065
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||||||||||||||  ||||| ||||||||||| ||||| |||||||||||||| |||||||||    
T  30581993 aatatagcttataaaaacagcttgtagcatatacaaaaacaagttaactttattttatctttttctataaaaa 30582065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 24915102 - 24915177
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatg 113  Q
    |||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||| ||| ||| ||||    
T  24915102 gcttatgaaaacagcttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttatg 24915177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 42174873 - 42174785
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||||||||| |||| ||||| |||||||||  |||||||||| ||||||||||| |||||||| ||  ||||||| ||||||||||||    
T  42174873 cttataaaaacaacttatagcatatacaaaaac--tttaacattactttatcttttgatataaaaatagcctatgcaagcttatacataag 42174785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 41184726 - 41184767
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41184726 tacaaaaacaatttaacattattttatcttttgctataaaaa 41184767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 51929592 - 51929689
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataa-aaagagtgtatgcaaacttatacataagtgcttgt 136  Q
    ||||||||||||||||  |||| || ||||||||||| |||||  ||||||||||||||||| ||| || |||||||| |||| ||||||| ||||||    
T  51929592 ttataaaaacagcttaaggcatatataaaaacaattttacattggtttatcttttgctataataaaaagcgtatgcaagcttagacataagcgcttgt 51929689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 33541759 - 33541855
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||| |||| |||||||||||||| |||||||||| ||| |||| || |||||||||| |   ||| ||| |||||||||||| ||||    
T  33541759 gcttataaaaacaacttagagcatgtacaaaaagaatttaacatcattatatccttagctataaaaatatcttattcaagcttatacataagcgctt 33541855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 49938723 - 49938607
Alignment:
Q  66 aaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgtgctataaggtgcaaataagctattcatcc 165  Q
    ||||| || ||||| ||| |||||| ||||||||| ||| ||  ||||  | |||||||||||| |||||||||||||| |||| ||||||| || ||||    
T  49938723 aaaaaaaagttaactttaatttatcctttgctatagaaatagcttatgtgagcttatacataagcgcttgtgctataagctgcagataagctttttatcc 49938624  T
Q  166 aaacaagcactaaatct 182  Q
    ||||| || ||||||||    
T  49938623 aaacaggccctaaatct 49938607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 7862102 - 7862031
Alignment:
Q  33 atatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||| ||||||| |||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||||||    
T  7862102 atatagcttatagaaacagcttatagcatagacaaaaacaatttaccatcattttatctttttctataaaaa 7862031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 17603429 - 17603570
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatttt---atcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||| ||||||||||||| |||| ||||| ||||||||||||||||| |||||||   ||||||| ||| ||||| ||  ||| ||| |  | | ||||    
T  17603429 aatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgttattttttaatctttttctacaaaaatagcttattcaagcgaacatataa 17603528  T
Q  129 gtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    | |||||||||||||| | |||||||||  || |||||||||    
T  17603529 gcgcttgtgctataagctacaaataagccgtttatccaaaca 17603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 45145226 - 45145179
Alignment:
Q  57 agcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  45145226 agcatatacaaaaacaatttaatattattttatcttttgctataaaaa 45145179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 26678922 - 26678844
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaa 116  Q
    ||||||||| ||| |||| ||||| |||| ||||||| |||| ||||||||||||||||| |||||| ||| |||||||    
T  26678922 gcttataaatacaacttatagcatttacataaacaatgtaactttattttatcttttgctgtaaaaatagtttatgcaa 26678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 37769711 - 37769801
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataa 128  Q
    ||||||||||||| |||  |||||  ||||||| |||||||| |||||||||| ||||||||||||| | | |||| ||| ||||||||||    
T  37769711 gcttataaaaacaacttgtagcataaacaaaaataatttaactttattttatcatttgctataaaaataatttatgtaaatttatacataa 37769801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 30192014 - 30191914
Alignment:
Q  35 atggcttataaaaacagcttacagcatgtaca-aaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgct 133  Q
    ||||||||||||||||||||| ||||| | || |||| || ||||| ||||||||| |||||||||||||| ||  || | | ||||||||| |||||||    
T  30192014 atggcttataaaaacagcttatagcatatgcacaaaataaattaactttattttattttttgctataaaaatagcttaggtatacttatacacaagtgct 30191915  T
Q  134 t 134  Q
    |    
T  30191914 t 30191914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30581838 - 30581755
Alignment:
Q  20 cataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||| | ||||||||||||||||||| | |||| ||||| || |||||||||||||| |||||| ||| ||| |||||||||    
T  30581838 cataagctcccaaatatggcttataaaaaaa-cttatagcatataaaaaaacaatttaactttatttcatcgttttctataaaaa 30581755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 9572138 - 9572221
Alignment:
Q  17 tcacataagcactcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||||||||  |||||  ||||| ||| ||||| ||||| ||| | ||||||| ||||||||| ||||||||||||||||||||    
T  9572138 tcacataagttctcaatgatggcatatgaaaacggcttatagcttatacaaaagcaatttaactttattttatcttttgctata 9572221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 27976614 - 27976523
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataag 129  Q
    |||||| |||||| |||| ||||| ||||||||||||||||| || ||  ||| ||||||||||||| ||  |||| || ||||||||||||    
T  27976614 gcttatgaaaacaacttatagcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagcttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 44932005 - 44932079
Alignment:
Q  57 agcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||| ||||||||||||||||| ||   ||||||||||||||||| | ||| ||||||| ||||||| |||||||||    
T  44932005 agcatatacaaaaacaatttaacttt---ttatcttttgctataaatatagtttatgcaagcttatacctaagtgctt 44932079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 47432108 - 47432049
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||| |||| ||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  47432108 aaaacaccttatagcatattcaaaaacaatttaactttattttatctttttctataaaaa 47432049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 13810015 - 13809957
Alignment:
Q  40 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgcta 98  Q
    |||||||||||   || ||||| ||||||||||||||||| ||||||||||||||||||    
T  13810015 ttataaaaacaatatatagcatatacaaaaacaatttaactttattttatcttttgcta 13809957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 36872263 - 36872221
Alignment:
Q  63 tacaaaaacaatttaaca-ttattttatcttttgctataaaaa 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  36872263 tacaaaaacaatttaacaattattttatcttttgctataaaaa 36872221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 45661184 - 45661226
Alignment:
Q  62 gtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  45661184 gtacaaaaacaatttaatgttattttatcttttgctataaaaa 45661226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 33186285 - 33186216
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagag 107  Q
    ||||||||||||| |||| ||||| ||||| || |||||||| || ||||||| ||||||||| ||||||    
T  33186285 gcttataaaaacaacttatagcatatacaagaaaaatttaactttcttttatcctttgctatagaaagag 33186216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 51688717 - 51688668
Alignment:
Q  45 aaaacagcttacagcatgtacaaaaacaatttaacattattttatctttt 94  Q
    |||||| |||| ||||||||||||||||||||| | ||||||||||||||    
T  51688717 aaaacaacttatagcatgtacaaaaacaatttatctttattttatctttt 51688668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 1510361 - 1510456
Alignment:
Q  38 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||||||||| |||| | | | ||||||||||||| ||||||| ||||||||||| | |||||| ||  | ||||| |||||| ||||||||||    
T  1510361 gcttataaaaacaacttataacctatacaaaaacaattgaacatta-tttatcttttgttttaaaaatagcttttgcaagcttatatataagtgctt 1510456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 3234060 - 3234108
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaaca 80  Q
    ||||| ||||||||||||| |||| ||||| ||||||||||||||||||    
T  3234060 aatatagcttataaaaacaacttatagcatatacaaaaacaatttaaca 3234108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 4576830 - 4576758
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||| |||||| ||||||||||| | | |||||||||| | |||||| |||||| |||||||| ||||||||    
T  4576830 aatatagcttatgaaaacagcttataacttgtacaaaaatattttaactttatttaatcttttgttataaaaa 4576758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 15477583 - 15477535
Alignment:
Q  52 cttacagcatgtacaaaaacaatttaacattattttatcttttgctata 100  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  15477583 cttatagcatatacaaaaacaatttaactttattttatcttttactata 15477535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 18556954 - 18556859
Alignment:
Q  29 tcaaatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttataca 125  Q
    |||||||| |||| ||||| || |||| ||| | ||||||| |||||||||| ||||||||||||||| ||||||| ||  ||| ||| ||||||||    
T  18556954 tcaaatatagcttgtaaaagcaacttatagcgtatacaaaa-caatttaacaatattttatcttttgcaataaaaatagcttatacaagcttataca 18556859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 14576698 - 14576765
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctat 99  Q
    ||||| ||||||||||| |  ||| ||||| ||||||||||||||||| |||||||||| ||| ||||    
T  14576698 aatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttattttatcctttactat 14576765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 37473399 - 37473320
Alignment:
Q  57 agcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgcttgt 136  Q
    ||||| |||| |||| | ||||| || ||||||| ||||||||||||| ||  |||| || |||||||||||||||||||    
T  37473399 agcatatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataagtgcttgt 37473320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 473182 - 473124
Alignment:
Q  39 cttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgct 97  Q
    |||||||||||| |||| |||||  || ||||||||||||| |||||||| ||||||||    
T  473182 cttataaaaacaacttatagcatacacgaaaacaatttaactttattttaccttttgct 473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 488950 - 488896
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 172  Q
    ||||||||||||  ||||||||||||| | |||||||| |||| |||||||||||    
T  488950 cttatacataagcacttgtgctataagcttcaaataagttattaatccaaacaag 488896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 51190855 - 51190821
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgct 97  Q
    ||||||||||||||||| |||||||||||||||||    
T  51190855 tacaaaaacaatttaactttattttatcttttgct 51190821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 7028286 - 7028249
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  7028286 tacaaaaacaacttaactttattttatcttttgctata 7028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 34619454 - 34619491
Alignment:
Q  63 tacaaaaacaatttaacattattttatcttttgctata 100  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  34619454 tacaaaaacaatttaaccttattttatcttttgttata 34619491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 41195348 - 41195393
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||| |||||||||||||| |||||||||| |||| |||||||||    
T  41195348 ataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 43589498 - 43589555
Alignment:
Q  77 aacattattttatcttttgctataaaaagagtgtatgcaaacttatacataagtgctt 134  Q
    ||||||| |||||| |||||||||| || ||| | | |||||||||||||||||||||    
T  43589498 aacattaatttatcatttgctataacaatagtttgtacaaacttatacataagtgctt 43589555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 44217289 - 44217334
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||||||||||||||| |||||||| || ||| |||||||||    
T  44217289 ataagtgcttgtgctataagctgcaaatatgcaatttatccaaaca 44217334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 41505711 - 41505655
Alignment:
Q  32 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatttta 88  Q
    ||||| |||||||||||||||||| | ||| ||| ||||||||||||| ||| ||||    
T  41505711 aatatagcttataaaaacagcttataacatatacgaaaacaatttaactttaattta 41505655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 46423203 - 46423151
Alignment:
Q  118 cttatacataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||| ||||||||||||||| |||||| |||||||||| | || |||||||||    
T  46423203 cttagacataagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 158024 - 157978
Alignment:
Q  124 cataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    |||||||| |||||||||||| |||||||||||| || |||||||||    
T  158024 cataagtgtttgtgctataagctgcaaataagctgtttatccaaaca 157978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 6830 - 6785
Alignment:
Q  125 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 170  Q
    ||||||||||||||| |||| ||||||||||| ||| |||||||||    
T  6830 ataagtgcttgtgctctaagctgcaaataagcaatttatccaaaca 6785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 21358 - 21395
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctataaaaa 104  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  21358 aaaacaatttaactttattttatcttttcctataaaaa 21395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 84209 - 84241
Alignment:
Q  67 aaaacaatttaacattattttatcttttgctat 99  Q
    |||||||||| ||||||||||||||||||||||    
T  84209 aaaacaattttacattattttatcttttgctat 84241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University