View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11395_high_8 (Length: 400)

Name: NF11395_high_8
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11395_high_8
NF11395_high_8
[»] chr1 (3 HSPs)
chr1 (1-382)||(34052971-34053352)
chr1 (12-382)||(15239283-15239653)
chr1 (174-220)||(50087325-50087371)
[»] chr7 (2 HSPs)
chr7 (177-352)||(49041181-49041356)
chr7 (147-355)||(31333824-31334032)
[»] chr4 (7 HSPs)
chr4 (146-369)||(46572619-46572842)
chr4 (174-229)||(26453327-26453382)
chr4 (288-382)||(19742856-19742950)
chr4 (288-382)||(19797138-19797232)
chr4 (288-382)||(19539813-19539907)
chr4 (298-373)||(26453451-26453526)
chr4 (288-382)||(19671736-19671830)
[»] chr6 (1 HSPs)
chr6 (174-382)||(27776495-27776703)
[»] chr2 (1 HSPs)
chr2 (147-250)||(23499261-23499364)
[»] chr5 (1 HSPs)
chr5 (171-221)||(23271585-23271635)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 34052971 - 34053352
Alignment:
Q  1 agaaatcaattggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattggtacttcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34052971 agaaatcaattggtgtatcactctcaaaagatttaatggcggttgccggagaagcactgaaaaccaacatcacaacacttggtccattggtacttcctat 34053070  T
Q  101 gtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053071 gtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcat 34053170  T
Q  201 ttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053171 ttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaata 34053270  T
Q  301 gatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053271 gatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 34053352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 15239283 - 15239653
Alignment:
Q  12 ggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattggtacttcctatgtcagaacagc 111  Q
    ||||||||||||||||||||  ||||||| || |||||||||||||||||||| |||||||||||| | || ||||| || || |||||||| |||||||    
T  15239283 ggtgtatcactctcaaaagacctaatggctgttgccggagaagcactcaaaacaaacatcacaacattaggaccattagtcctacctatgtcggaacagc 15239382  T
Q  112 ttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattca 211  Q
    |  | |||||||  || ||||||||  |||||   ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15239383 tcttatttttcgggacattggttgcgcgaaaaatcttcaagatgaaaataaaaccatacattcctgattttaaattagcttttgagcatttttgtattca 15239482  T
Q  212 tgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaac 311  Q
    ||||||||||||||||||||||||||| || ||||||||||||||  | |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  15239483 tgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggtaac 15239582  T
Q  312 acttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15239583 acttctagtagttcattgtggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatag 15239653  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 50087371 - 50087325
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtgg 220  Q
    ||||||||||||  ||||||||| ||||||||||| |||||||||||    
T  50087371 cctgattttaaacaagcttttgaacatttttgtatacatgctggtgg 50087325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 352
Target Start/End: Complemental strand, 49041356 - 49041181
Alignment:
Q  177 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatgg 276  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| ||  |||| |||||| | || ||||| ||||||||||    
T  49041356 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 49041257  T
Q  277 aaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactga 352  Q
    |||| ||  | ||||| ||  |||||||||| |||||||| || |||||  ||||||||||| |||||||||||||    
T  49041256 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 49041181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 355
Target Start/End: Original strand, 31333824 - 31334032
Alignment:
Q  147 ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga 246  Q
    |||||||||||||| || || || ||||||||||| ||  ||||||| || ||||| || |||||||| ||||||||||||||||| |||||  ||||||    
T  31333824 ttcaagatgaagatcaagccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga 31333923  T
Q  247 aaaatcttg-accttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggctt 345  Q
    |||| |||| | ||   |   ||||||||||| || ||||||||||||||  || | ||||||||||| || || |||||| | ||||| ||||||||||    
T  31333924 aaaa-cttgaagctgtctccatggcatatggagccgtcaagaatgacactttatcgttttggtaacacctcgagcagttcactttggtacgaattggctt 31334022  T
Q  346 atactgaagc 355  Q
    | || |||||    
T  31334023 acacggaagc 31334032  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 369
Target Start/End: Original strand, 46572619 - 46572842
Alignment:
Q  146 tttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagag 245  Q
    ||||||||||||||||||||| || ||||||||||| ||  |||||||||| |||||||| || ||||| || || |||||||||||||||||| | |||    
T  46572619 tttcaagatgaagataaaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgttttggatgaactggag 46572718  T
Q  246 aaaaatcttg-accttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggct 344  Q
    ||||| |||| | ||   |   ||||||||||| ||||| || ||||||||  || | ||||| ||||| ||||| |||||| | |||||||||||||||    
T  46572719 aaaaa-cttgcagctatctccatggcatatggagccatcgaggatgacactttatcgttttggaaacacatctagcagttcactttggtatgaattggct 46572817  T
Q  345 tatactgaagctaaagggaggatta 369  Q
    || || ||||| |||||||| ||||    
T  46572818 tacacagaagccaaagggagaatta 46572842  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 26453327 - 26453382
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgt 229  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||    
T  26453327 cctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgt 26453382  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19742950 - 19742856
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19742950 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19742856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 19797138 - 19797232
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19797138 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19797232  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19539907 - 19539813
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| |||||||   | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19539907 atgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19539813  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 26453451 - 26453526
Alignment:
Q  298 atagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaa 373  Q
    |||||||||| || ||||||   |||||| | ||||||||||||||||| | |||||||||||| ||||| |||||    
T  26453451 atagatttggcaatacttcttcaagttcaatttggtatgaattggcttacattgaagctaaaggaaggatgagaaa 26453526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19671830 - 19671736
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| ||  |  |||||||||||||    
T  19671830 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagagtatgaaaaggtgatag 19671736  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 382
Target Start/End: Complemental strand, 27776703 - 27776495
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcata 273  Q
    |||||||||||  ||  |||||||||||||||||||||| ||||||||| || ||||   |||||  || | |||   ||||   | ||||||||||| |    
T  27776703 cctgattttaagctatgttttgagcatttttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaa 27776604  T
Q  274 tggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaa 373  Q
    | || || ||||||||||||||  |||||| ||| || ||||| ||||||||  | |||||||  |||||||||  ||||||||| || ||||| || ||    
T  27776603 ttgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaa 27776504  T
Q  374 aggtgatag 382  Q
    |||||||||    
T  27776503 aggtgatag 27776495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 23499364 - 23499261
Alignment:
Q  147 ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga 246  Q
    |||||||||||||| || || || ||||| ||||| ||  ||||||| || ||||| || |||||||| ||||||||||||||||| |||||  ||||||    
T  23499364 ttcaagatgaagatcaagccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga 23499265  T
Q  247 aaaa 250  Q
    ||||    
T  23499264 aaaa 23499261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 23271635 - 23271585
Alignment:
Q  171 attcctgattttaaattagcttttgagcatttttgtattcatgctggtgga 221  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||||||||    
T  23271635 attcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga 23271585  T

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