View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_1 (Length: 829)
Name: NF11395_low_1
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 780; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 14 - 813
Target Start/End: Complemental strand, 30898681 - 30897882
Alignment:
| Q |
14 |
ggacatcatacgtactctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaa |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898681 |
ggacaccatacgtactctggagcccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaaattcagaaagctacaa |
30898582 |
T |
|
| Q |
114 |
ttaatgacatgtctaagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898581 |
ttaatgacatgtctaagactgcatgtctgatcttccatagcacaaaagtgatgcttcaatcaaaagatggtcacattacatgaaattttaagctcgggag |
30898482 |
T |
|
| Q |
214 |
aataaatagtccatataaagtcaatacctgacaatactagggtatgacgcccaccggcagcaacacttgttatctttacccctggattcagtgtgacaag |
313 |
Q |
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| T |
30898481 |
aataaatagtccatataaattcaatacctgacaatactagggtatgacgcccaccagcagcaacacttgttatctttacccctggattcagtgtgacaag |
30898382 |
T |
|
| Q |
314 |
acatggcattgctgttagaatatcatcaccagatgacgaggtttgagccgcttgctttgctgaagatactttccttctcttactactttcttctccactt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30898381 |
acatggcattgctgttagaatatcatcaccagatgacgaggtttgagccgcttgctttgccgaagatactttccttctcttactactttcttctccactt |
30898282 |
T |
|
| Q |
414 |
gaaacagttcctcctgtggattttgagacttgagaacgagagctcactgttgcaaaatcactctacatcagtttgttagataaagcataagtatccttct |
513 |
Q |
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| T |
30898281 |
gaaacagttcctcctgtggattttgagacttgagaacgagagctcactgttgcaaaatcactctacatcagtttgttagataaagcataagtatccttct |
30898182 |
T |
|
| Q |
514 |
ttgctcatcataaagtgcaaaactcttttcttctttctttttggggtttcgaactttgtatcttaaatcagttcccttctccagaatccttttcgtagac |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898181 |
ttgctcatcataaagtgcaaaactcttttcttctttctttttggggtttcgaactttgtatcttaaatcagttcccttctccagaatccttttcgtagac |
30898082 |
T |
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| Q |
614 |
cttggctaagcttagaccacctcctgggaggggcaggtatctgtagacaaatgtccattgaaaagaggttagacataccttgttctgtcaagaatgaact |
713 |
Q |
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| T |
30898081 |
cttggctaagcttagaccacctcctgggaggggcaggtatctgtagacaaatgtccattgaaaagaggttagacataccttgttctgtcaagaatgaact |
30897982 |
T |
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| Q |
714 |
ctgctttccttgtgcatctttttcaggacttaccccttgcgaagtttcaccgaataccttcccagaaggaatacattccttccatccccatgtgtaaact |
813 |
Q |
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| T |
30897981 |
cggctttccttgtgcatctttttcaggacttaccccttgcgaagtttcaccgaataccttcccagaaggaatacattccttccatccccatgtgtaaact |
30897882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 23117699 - 23117638
Alignment:
| Q |
36 |
cccaaaccaagctgcccttcacctccatagccccaaccccacacctgtcctatatctgaaaa |
97 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||| |||||||| | ||||||||| |
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| T |
23117699 |
cccaaacctagctgtccttcgcctccatagccccaaccccagacctgtcccacatctgaaaa |
23117638 |
T |
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