View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_10 (Length: 361)
Name: NF11395_low_10
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 86 - 344
Target Start/End: Complemental strand, 49538751 - 49538493
Alignment:
| Q |
86 |
gaatcataaagaaatacataagataagatagagaaaatgtgaatatatgacaagtccattattgacacaaggacactacttaccagacatgtcttctaat |
185 |
Q |
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| T |
49538751 |
gaatcataaagaaatacataagataagatagagaaaatgtgaatatatgacaagtccattattgacacaatgacactacttaccaaacatgtcttctaat |
49538652 |
T |
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| Q |
186 |
tgaatggctagacttgagtatcctccatgatcaagaatacaaattttcctaccaatggagaccccatccatgttaaccttcacataagcccatctctcat |
285 |
Q |
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| T |
49538651 |
tgaatggctagacttgagtatcctccatgatcaagaatacaaattttcctaccaatggagaccccatccatgttaaccttcacataagcccatctctcat |
49538552 |
T |
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| Q |
286 |
tgctctggactccctctatctcttcatcaaagttttcatggacagatcttgaattcttc |
344 |
Q |
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| T |
49538551 |
tgctctgtactccctctatctcttcatcaaagttttcatggacagatctagaattcttc |
49538493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 49538862 - 49538780
Alignment:
| Q |
7 |
gtcttcactgtccttgtagaataatgagtactctgatccagattcaaataatcttataccagatactgattggctacctgaat |
89 |
Q |
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| T |
49538862 |
gtcttcactgtccttgtagaataatgagtactctgatccagattcaaataatcttataccagatactgattggctacctgaat |
49538780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 49553252 - 49553179
Alignment:
| Q |
252 |
tccatgttaaccttcacataagcccatctctcattgctctggactccctctatctcttcatcaaagttttcatg |
325 |
Q |
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| T |
49553252 |
tccatgttaaccttcacataaccccatctctcattgttctggaccccctctatctcttcatcgaagttttcatg |
49553179 |
T |
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