View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11395_low_11 (Length: 356)
Name: NF11395_low_11
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 49115650 - 49115989
Alignment:
| Q |
1 |
gaacttggggacaaacaattcaactaacaagtgaattgtcacgcaacaccattataaaatagttgaatgagaggtcacatcgtttgactgataggcaata |
100 |
Q |
| |
|
|||||||||| | ||||| | ||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49115650 |
gaacttggggcaacacaatcccactaacaagggaattatcacgcaacacctttataaattagttgaatgagaggtcacatcgtttgactgataggcaata |
49115749 |
T |
|
| Q |
101 |
gacacactataaataccacattatgtgttgtaataaacacagtcagtcaatctaacaaacttatttcaagatttttactattttatccctttgcttttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49115750 |
tacacactataaataccacattatgtgttgtaataaacacaatcagtcaatcaaacaaacttatttcaggatttttactattttatccctttgcttttat |
49115849 |
T |
|
| Q |
201 |
ttattcatctcttggtcctgtactgaagaagttagagaactcacagttgggggcataagttcatccctcaaccttaatcgcttgaagtaatggaatcaca |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49115850 |
ttattcatctcttggtcctgtacggaagaagttagagaattcacgattgggggcataagctcaccccttaaccttaatcgcttgaagtaatggaatcaca |
49115949 |
T |
|
| Q |
301 |
gttaaagaaactctacaattctcgacaaattttaactttc |
340 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
49115950 |
gttaaagaaactctacaatttttgacaaatttcaactttc |
49115989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 15491908 - 15491868
Alignment:
| Q |
76 |
cacatcgtttgactgataggcaatagacacactataaatac |
116 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
15491908 |
cacatcgtttgactaatatgcaataggcacactataaatac |
15491868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University