View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11395_low_12 (Length: 339)

Name: NF11395_low_12
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11395_low_12
NF11395_low_12
[»] chr6 (4 HSPs)
chr6 (47-110)||(10070299-10070362)
chr6 (101-138)||(5172125-5172162)
chr6 (104-149)||(26320585-26320630)
chr6 (104-140)||(32149141-32149177)
[»] chr4 (8 HSPs)
chr4 (104-145)||(241406-241447)
chr4 (104-149)||(37463516-37463561)
chr4 (104-151)||(54857637-54857684)
chr4 (103-145)||(9913897-9913939)
chr4 (104-145)||(10303533-10303574)
chr4 (103-140)||(31604314-31604351)
chr4 (104-145)||(35287529-35287570)
chr4 (104-140)||(31780748-31780784)
[»] chr2 (6 HSPs)
chr2 (104-149)||(21497661-21497706)
chr2 (103-145)||(3752796-3752838)
chr2 (104-145)||(17736791-17736832)
chr2 (104-149)||(32957565-32957610)
chr2 (104-140)||(4056793-4056829)
chr2 (104-140)||(27314870-27314906)
[»] chr1 (5 HSPs)
chr1 (104-145)||(29739335-29739376)
chr1 (104-145)||(13673543-13673584)
chr1 (104-141)||(21015964-21016001)
chr1 (104-149)||(26498055-26498100)
chr1 (104-149)||(50595905-50595950)
[»] chr7 (7 HSPs)
chr7 (104-151)||(46207752-46207799)
chr7 (104-146)||(13044164-13044206)
chr7 (104-145)||(580948-580989)
chr7 (104-145)||(47589575-47589616)
chr7 (104-140)||(13955483-13955519)
chr7 (103-143)||(32862619-32862659)
chr7 (104-148)||(35666298-35666342)
[»] chr3 (5 HSPs)
chr3 (105-140)||(53705650-53705685)
chr3 (104-145)||(7868720-7868761)
chr3 (104-145)||(52575945-52575986)
chr3 (104-140)||(13800670-13800706)
chr3 (104-140)||(41737799-41737835)
[»] chr5 (2 HSPs)
chr5 (103-145)||(22619872-22619914)
chr5 (104-140)||(18391603-18391639)
[»] scaffold0098 (1 HSPs)
scaffold0098 (104-145)||(5423-5464)
[»] scaffold0006 (1 HSPs)
scaffold0006 (104-145)||(171157-171198)
[»] scaffold0072 (1 HSPs)
scaffold0072 (104-140)||(25698-25734)
[»] chr8 (3 HSPs)
chr8 (104-140)||(9656019-9656055)
chr8 (104-140)||(32878664-32878700)
chr8 (109-149)||(35103100-35103140)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 10070362 - 10070299
Alignment:
Q  47 atcagttcttagcatccatttagatatcgatgaagaaacctccattctcatgataatatatttt 110  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  10070362 atcagttcttagcatccatttagatatcgataaagaaacctctattttcatgataatatgtttt 10070299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 5172162 - 5172125
Alignment:
Q  101 aatatattttatgcattgttcttaccaaccgagctaag 138  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  5172162 aatatattttatgcattgtccataccaaccgagctaag 5172125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 26320585 - 26320630
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  26320585 atattttatgcattgtccataccaactgagctaagctcacgatgac 26320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 32149177 - 32149141
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32149177 atatattatgcattgttcttaccaactgagctaagct 32149141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 241406 - 241447
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  241406 atattttatgcattgttcataccaaccgagctaagcttacga 241447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 37463561 - 37463516
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||    
T  37463561 atatattatgcattgttcataccaaccgagctaagctcacgatgac 37463516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 54857637 - 54857684
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgaccg 151  Q
    |||||||||||||||||  |||||||||||||||||| |||| |||||    
T  54857637 atattttatgcattgtttataccaaccgagctaagctcacgaggaccg 54857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 9913939 - 9913897
Alignment:
Q  103 tatattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  9913939 tatattttatgcattgttcataccaactgagctaagctcacga 9913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 10303533 - 10303574
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  10303533 atattttatgcattgtccttaccaactgagctaagctcacga 10303574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 31604314 - 31604351
Alignment:
Q  103 tatattttatgcattgttcttaccaaccgagctaagct 140  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  31604314 tatattttatgcattgttcttaccaactgagttaagct 31604351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 35287529 - 35287570
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  35287529 atattttatgcattgttcataccaactgagctaagctcacga 35287570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 31780784 - 31780748
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  31780784 atattttatgcattgtccttaccaactgagctaagct 31780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 21497706 - 21497661
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||    
T  21497706 atatattatgcattgttcttaccaaccgagttaagctcacgatgac 21497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 3752796 - 3752838
Alignment:
Q  103 tatattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  3752796 tatattttatgcattgttcataacaaccgagctaagctcacga 3752838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 17736832 - 17736791
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  17736832 atattttatgcattgttcataccaactgagctaagctcacga 17736791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 32957565 - 32957610
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||| ||||||||||||| ||||||||||||||| || ||||||||    
T  32957565 atatattatgcattgttcataccaaccgagctaaactcacgatgac 32957610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 4056829 - 4056793
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  4056829 atatattatgcattgtccttaccaaccgagctaagct 4056793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 27314906 - 27314870
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  27314906 atattttatgcattgttcttaccaactgagttaagct 27314870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 29739376 - 29739335
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  29739376 atattttatgcattgtccttaccaactgagctaagctaacga 29739335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 13673584 - 13673543
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  13673584 atattttatgcattgttcaaaccaaccgagctaagctcacga 13673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 21016001 - 21015964
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagcta 141  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  21016001 atatattatgcattgttcttaccaactgagctaagcta 21015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 26498100 - 26498055
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  26498100 atattttatgcattgtccgtaccaactgagctaagctcacgatgac 26498055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 50595905 - 50595950
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    |||||||||||||||||| ||||||  |||||||||| ||||||||    
T  50595905 atattttatgcattgttcataccaattgagctaagctcacgatgac 50595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 46207799 - 46207752
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatgaccg 151  Q
    |||||||||||||||||| ||||||| |||||||||| |||| |||||    
T  46207799 atattttatgcattgttcataccaactgagctaagctcacgaggaccg 46207752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 13044164 - 13044206
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgat 146  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  13044164 atattttatgcattgtccttaccaactgagctaagctcacgat 13044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 580948 - 580989
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  580948 atattttatgcattgtccataccaaccgagctaagctcacga 580989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 47589575 - 47589616
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  47589575 atattttatgcattgttcataccaactgagctaagctcacga 47589616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 13955519 - 13955483
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  13955519 atattttatgcattgttcataccaactgagctaagct 13955483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 32862659 - 32862619
Alignment:
Q  103 tatattttatgcattgttcttaccaaccgagctaagctaac 143  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  32862659 tatattttatgcgttgttcttaccaactgagttaagctaac 32862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 35666342 - 35666298
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacgatga 148  Q
    |||| ||||||||||| ||||||||||||| |||||| |||||||    
T  35666342 atatattatgcattgtccttaccaaccgagttaagctcacgatga 35666298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 53705650 - 53705685
Alignment:
Q  105 tattttatgcattgttcttaccaaccgagctaagct 140  Q
    ||||||||||||||||||||||||| ||||||||||    
T  53705650 tattttatgcattgttcttaccaactgagctaagct 53705685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 7868761 - 7868720
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  7868761 atatattatgcattgttcttaccaactgagctaagctcacga 7868720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 52575986 - 52575945
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  52575986 atattttatgcattgttcataccaactgagctaagcttacga 52575945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 13800706 - 13800670
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  13800706 atatattatgcattgttcttaccaactgagctaagct 13800670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 41737835 - 41737799
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  41737835 atattttatgcattgtccttaccaactgagctaagct 41737799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 22619914 - 22619872
Alignment:
Q  103 tatattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  22619914 tatattttatgcattgttcataccaactgagctaagctcacga 22619872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 18391639 - 18391603
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  18391639 atattttatgcattgtccttaccaactgagctaagct 18391603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 5464 - 5423
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  5464 atatattatgcattgttcttaccaactgagctaagctcacga 5423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 171198 - 171157
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagctaacga 145  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  171198 atattttatgcattgttcaaaccaaccgagctaagctcacga 171157  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 25734 - 25698
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  25734 atatattatgcattgttcttaccaactgagctaagct 25698  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 9656019 - 9656055
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  9656019 atattttatgcattgtccttaccaactgagctaagct 9656055  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 32878700 - 32878664
Alignment:
Q  104 atattttatgcattgttcttaccaaccgagctaagct 140  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32878700 atatattatgcattgttcttaccaactgagctaagct 32878664  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 35103140 - 35103100
Alignment:
Q  109 ttatgcattgttcttaccaaccgagctaagctaacgatgac 149  Q
    ||||||||||||| ||||||| |||||||||| ||||||||    
T  35103140 ttatgcattgttcataccaactgagctaagctcacgatgac 35103100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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