View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_17 (Length: 263)
Name: NF11395_low_17
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 49115722 - 49115471
Alignment:
| Q |
1 |
ctctcattcaactaatttataaaggtgttgcgtgacaattcccttgttagtggaattgtgtggccccaagttcggcttcactctccttttcttagtatga |
100 |
Q |
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| T |
49115722 |
ctctcattcaactaatttataaaggtgttgcgtgataattcccttgttagtgggattgtgttgccccaagttcggcttcactctc-ttttcttggtatga |
49115624 |
T |
|
| Q |
101 |
ttcgttgacacggtccttttgtgcgaaggttcactaaagatcacatctttttccccattcgtcaaaatggttattggcattgatagcatatatcatggat |
200 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
49115623 |
tttgttgacacggtccttttgtgcgaaggtccactaaagatcacgtctttttcctcattcgtcaaaatggttactggcgttgatagcatatatcatggat |
49115524 |
T |
|
| Q |
201 |
tcgctgcatcactgtcaagtcttactatgttttgtctcagttctatgcctttg |
253 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49115523 |
tcgccgcatcactgtcaagtcttactatgctttgtctcagttctatgcctttg |
49115471 |
T |
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