View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_21 (Length: 252)
Name: NF11395_low_21
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 30166361 - 30166126
Alignment:
| Q |
17 |
gaggaaacagcagagctatgtgatttgtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagt |
116 |
Q |
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| T |
30166361 |
gaggaaacagcagagctatgtgatttgtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagt |
30166262 |
T |
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| Q |
117 |
attctgcctatcacttcccatgcttcatgataccaagagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaatcaa |
216 |
Q |
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| T |
30166261 |
attctgcctatcacttcccatgcttcatgataccaagagttcataatacaagatcaatatcagtaaaatggaaaatacaaatatttcacaatcaaatcaa |
30166162 |
T |
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| Q |
217 |
attcttattgtttggtatcactagttatcttaagct |
252 |
Q |
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| T |
30166161 |
attcttattgtttggtatcactagttatcttaagct |
30166126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 30124610 - 30124655
Alignment:
| Q |
125 |
tatcacttcccatgcttcatgataccaagagttcataatacaagat |
170 |
Q |
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| T |
30124610 |
tatcacttctcatgcttcatgatagcaatcgttcataatacaagat |
30124655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 43164236 - 43164433
Alignment:
| Q |
20 |
gaaacagcagagctatgtgatttgtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtatt |
119 |
Q |
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| T |
43164236 |
gaaacggcagagctacgcgattcgtgaaccaacatttgagctgctgataaagatcaactctactctcaattatgttatgtcttcttgcaatttcactatt |
43164335 |
T |
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| Q |
120 |
ctgcctatcacttcccatgcttcatgat----accaagagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaat |
213 |
Q |
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| T |
43164336 |
ttgcctatcacttcacatgctttatgattccaaccaagagttcatgatacaagatagatatcactaaaaaggtaaatatgaatatttcacaatcaaat |
43164433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 41310714 - 41310807
Alignment:
| Q |
152 |
agagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagttatcttaag |
250 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||||| |||||||| |
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| T |
41310714 |
agagttcataatacaagatagatatcagtaaaatgataaataccaatatttcacaatc-----aaattcttctagtttggtatcactagtcatcttaag |
41310807 |
T |
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