View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_3 (Length: 588)
Name: NF11395_low_3
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Original strand, 3100072 - 3100514
Alignment:
| Q |
12 |
agagacgagtgtaaggcggtgttccgtggcgggaggtttatagttgttggtggttacacgacggagaatcaagggaggtttgagaggagtgcggaggcgt |
111 |
Q |
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| T |
3100072 |
agagacgagtgtaaggcggtgttccgtggcgggaggtttatagttgttggtggttacacgacggagaatcaagggaggtttgagaggagtgcggaggcgt |
3100171 |
T |
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| Q |
112 |
ttgattttgtgacgtggaagtggggtcaagtggaggaagagtatttggattgtgccacgtgtcctatgactttggtggacggtggtgatgaggaggagag |
211 |
Q |
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| T |
3100172 |
ttgattttgtgacgtggaagtggggtcaagtggaggaagagtatttggattgtgccacgtgtcctatgactttggtggacggtggtgatgaggaggagag |
3100271 |
T |
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| Q |
212 |
tgtttatatgtgttgcaatggtgaattggttatgatgaggggtcacacgtggcagaagatgggtagggttccagatgagatatgcaacgtggcgtatgtt |
311 |
Q |
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| T |
3100272 |
tgtttatatgtgttgcaatggtgaattggttatgatgagggctcacacgtggcagaagatgggtagggttccagatgagatatgcaacgtggcgtatgtt |
3100371 |
T |
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| Q |
312 |
ggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaaaat |
411 |
Q |
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| T |
3100372 |
ggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaaaat |
3100471 |
T |
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| Q |
412 |
tggattgtccagatgggtttaagggacatgtccaaactggttg |
454 |
Q |
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| T |
3100472 |
tggattgtccagatgggtttaagggacatgtccaaactggttg |
3100514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 573
Target Start/End: Original strand, 3100569 - 3100632
Alignment:
| Q |
510 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttt |
573 |
Q |
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| T |
3100569 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttt |
3100632 |
T |
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