View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_6 (Length: 467)
Name: NF11395_low_6
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 160 - 331
Target Start/End: Original strand, 7378141 - 7378309
Alignment:
| Q |
160 |
gaatgtttaatgtctaattaaatggttgatggttatacttacctcacggttaacaccagcagnnnnnnnnnnngttgttaaaatgtaatttcgtgccaat |
259 |
Q |
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| T |
7378141 |
gaatgtttaatgtctaattaaatggttgatagttatacttacctcacggttaacaccaacaattatttttt---ttgttaaaatgtaatttcgtgccaat |
7378237 |
T |
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| Q |
260 |
tataaaagcaacaaaaaatgaagttagatttagtcaggtaaacaaatagtaagaacgttgcttaacttgacc |
331 |
Q |
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| T |
7378238 |
tataaaagcaacaaaaaatgaagttagatttagtcaggtaaacaaatagtaagaacgttgcttaacttgacc |
7378309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7377982 - 7378093
Alignment:
| Q |
1 |
aaatctaaagcctaaaacctttatgtatataatggaacctgcagcagttaactcttacacactaaggaaaccgagtttcccaccaaaatgaagtttcttt |
100 |
Q |
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| T |
7377982 |
aaatctaaagcctaaaacctttatgtatataatggaacctgcagcagttaactcttacacactaaggaaactgagtttcccaccaaaatgaagtttctct |
7378081 |
T |
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| Q |
101 |
acacaaattgat |
112 |
Q |
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| T |
7378082 |
acacaaattgat |
7378093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 7378346 - 7378430
Alignment:
| Q |
368 |
tctatgcgaagacaagaagaagaaaaaccaaagttggtcagcttcaggcttcaaac---atgtatgcttagtggtgggtcaaaag |
449 |
Q |
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| T |
7378346 |
tctatgcgaagacaagaagaagaaaaaccaaagttggtcagcttcaggcttcaaacattatgtatgcttagtggtgggtcaaaag |
7378430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 7372212 - 7372253
Alignment:
| Q |
2 |
aatctaaagcctaaaacctttatgtatataatggaacctgca |
43 |
Q |
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| T |
7372212 |
aatctaaagcctaagacctttatgtctatcatggaacctgca |
7372253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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