View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11395_low_8 (Length: 400)

Name: NF11395_low_8
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11395_low_8
NF11395_low_8
[»] chr1 (3 HSPs)
chr1 (1-382)||(34052971-34053352)
chr1 (12-382)||(15239283-15239653)
chr1 (174-220)||(50087325-50087371)
[»] chr7 (2 HSPs)
chr7 (177-352)||(49041181-49041356)
chr7 (147-355)||(31333824-31334032)
[»] chr4 (7 HSPs)
chr4 (146-369)||(46572619-46572842)
chr4 (174-229)||(26453327-26453382)
chr4 (288-382)||(19742856-19742950)
chr4 (288-382)||(19797138-19797232)
chr4 (288-382)||(19539813-19539907)
chr4 (298-373)||(26453451-26453526)
chr4 (288-382)||(19671736-19671830)
[»] chr6 (1 HSPs)
chr6 (174-382)||(27776495-27776703)
[»] chr2 (1 HSPs)
chr2 (147-250)||(23499261-23499364)
[»] chr5 (1 HSPs)
chr5 (171-221)||(23271585-23271635)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 34052971 - 34053352
Alignment:
Q  1 agaaatcaattggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattggtacttcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34052971 agaaatcaattggtgtatcactctcaaaagatttaatggcggttgccggagaagcactgaaaaccaacatcacaacacttggtccattggtacttcctat 34053070  T
Q  101 gtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053071 gtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcat 34053170  T
Q  201 ttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053171 ttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaata 34053270  T
Q  301 gatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053271 gatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 34053352  T

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Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 15239283 - 15239653
Alignment:
Q  12 ggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattggtacttcctatgtcagaacagc 111  Q
    ||||||||||||||||||||  ||||||| || |||||||||||||||||||| |||||||||||| | || ||||| || || |||||||| |||||||    
T  15239283 ggtgtatcactctcaaaagacctaatggctgttgccggagaagcactcaaaacaaacatcacaacattaggaccattagtcctacctatgtcggaacagc 15239382  T
Q  112 ttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattca 211  Q
    |  | |||||||  || ||||||||  |||||   ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15239383 tcttatttttcgggacattggttgcgcgaaaaatcttcaagatgaaaataaaaccatacattcctgattttaaattagcttttgagcatttttgtattca 15239482  T
Q  212 tgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaac 311  Q
    ||||||||||||||||||||||||||| || ||||||||||||||  | |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  15239483 tgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggtaac 15239582  T
Q  312 acttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15239583 acttctagtagttcattgtggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatag 15239653  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 50087371 - 50087325
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtgg 220  Q
    ||||||||||||  ||||||||| ||||||||||| |||||||||||    
T  50087371 cctgattttaaacaagcttttgaacatttttgtatacatgctggtgg 50087325  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 352
Target Start/End: Complemental strand, 49041356 - 49041181
Alignment:
Q  177 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatgg 276  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| ||  |||| |||||| | || ||||| ||||||||||    
T  49041356 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 49041257  T
Q  277 aaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactga 352  Q
    |||| ||  | ||||| ||  |||||||||| |||||||| || |||||  ||||||||||| |||||||||||||    
T  49041256 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 49041181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 355
Target Start/End: Original strand, 31333824 - 31334032
Alignment:
Q  147 ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga 246  Q
    |||||||||||||| || || || ||||||||||| ||  ||||||| || ||||| || |||||||| ||||||||||||||||| |||||  ||||||    
T  31333824 ttcaagatgaagatcaagccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga 31333923  T
Q  247 aaaatcttg-accttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggctt 345  Q
    |||| |||| | ||   |   ||||||||||| || ||||||||||||||  || | ||||||||||| || || |||||| | ||||| ||||||||||    
T  31333924 aaaa-cttgaagctgtctccatggcatatggagccgtcaagaatgacactttatcgttttggtaacacctcgagcagttcactttggtacgaattggctt 31334022  T
Q  346 atactgaagc 355  Q
    | || |||||    
T  31334023 acacggaagc 31334032  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 369
Target Start/End: Original strand, 46572619 - 46572842
Alignment:
Q  146 tttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagag 245  Q
    ||||||||||||||||||||| || ||||||||||| ||  |||||||||| |||||||| || ||||| || || |||||||||||||||||| | |||    
T  46572619 tttcaagatgaagataaaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgttttggatgaactggag 46572718  T
Q  246 aaaaatcttg-accttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggct 344  Q
    ||||| |||| | ||   |   ||||||||||| ||||| || ||||||||  || | ||||| ||||| ||||| |||||| | |||||||||||||||    
T  46572719 aaaaa-cttgcagctatctccatggcatatggagccatcgaggatgacactttatcgttttggaaacacatctagcagttcactttggtatgaattggct 46572817  T
Q  345 tatactgaagctaaagggaggatta 369  Q
    || || ||||| |||||||| ||||    
T  46572818 tacacagaagccaaagggagaatta 46572842  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 26453327 - 26453382
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgt 229  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||    
T  26453327 cctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgt 26453382  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19742950 - 19742856
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19742950 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19742856  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 19797138 - 19797232
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19797138 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19797232  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19539907 - 19539813
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| |||||||   | |||||||| ||||| |||  |||||||||||| || || ||||||||||||||    
T  19539907 atgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgatag 19539813  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 26453451 - 26453526
Alignment:
Q  298 atagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaa 373  Q
    |||||||||| || ||||||   |||||| | ||||||||||||||||| | |||||||||||| ||||| |||||    
T  26453451 atagatttggcaatacttcttcaagttcaatttggtatgaattggcttacattgaagctaaaggaaggatgagaaa 26453526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 19671830 - 19671736
Alignment:
Q  288 atgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag 382  Q
    ||||||||  |||||| |||||||||||| ||||||||  | |||||||| ||||| |||  |||||||||||| ||  |  |||||||||||||    
T  19671830 atgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagagtatgaaaaggtgatag 19671736  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 382
Target Start/End: Complemental strand, 27776703 - 27776495
Alignment:
Q  174 cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcata 273  Q
    |||||||||||  ||  |||||||||||||||||||||| ||||||||| || ||||   |||||  || | |||   ||||   | ||||||||||| |    
T  27776703 cctgattttaagctatgttttgagcatttttgtattcatactggtggaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaa 27776604  T
Q  274 tggaaccatcaagaatgacactaaatagatttggtaacacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaa 373  Q
    | || || ||||||||||||||  |||||| ||| || ||||| ||||||||  | |||||||  |||||||||  ||||||||| || ||||| || ||    
T  27776603 ttgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaa 27776504  T
Q  374 aggtgatag 382  Q
    |||||||||    
T  27776503 aggtgatag 27776495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 23499364 - 23499261
Alignment:
Q  147 ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga 246  Q
    |||||||||||||| || || || ||||| ||||| ||  ||||||| || ||||| || |||||||| ||||||||||||||||| |||||  ||||||    
T  23499364 ttcaagatgaagatcaagccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga 23499265  T
Q  247 aaaa 250  Q
    ||||    
T  23499264 aaaa 23499261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 23271635 - 23271585
Alignment:
Q  171 attcctgattttaaattagcttttgagcatttttgtattcatgctggtgga 221  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||||||||    
T  23271635 attcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga 23271585  T

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