View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11395_low_9 (Length: 384)
Name: NF11395_low_9
Description: NF11395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11395_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 52647877 - 52647532
Alignment:
| Q |
17 |
agcacagaactagaagagggttagttgcttcaatatcaatgacaatttacctgctgaagtgttcctaatggtgtaacagtaggatccgatgaaaccaaag |
116 |
Q |
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| T |
52647877 |
agcacagaactagaagacggttagttgcttcaatatcaatgacaatttacctgctgaagtgttcctaatggtgtaacagtaggatccgatgaaaccaaag |
52647778 |
T |
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| Q |
117 |
catgctcacatcgcttgatagctttatgaagctccttcaaatgactatattttggatgcctgaccaaacctaaagatagtgaagtgctcaattgtaaaag |
216 |
Q |
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| T |
52647777 |
catgctcacattgcttgatagctttatgaagctccttcaaatgactatattttggatgcctgaccaaacctaaagatagtgaagtgctcaattgtaaaag |
52647678 |
T |
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| Q |
217 |
ctctcttttggttcatgatggaacaagaacatcattaaactatctttaagaccactcaggtgttgaaatgatccaagaatcaactcaacttgaggttcaa |
316 |
Q |
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| T |
52647677 |
ctctcttttggttcatgatggaacaagaacatcattaaactatctttaagaccactcaggtgttgaaatgatccaagaatcaactcaacttgaggttcaa |
52647578 |
T |
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| Q |
317 |
atcaaatgcatgtatatttatgatacattattacataagcgtagtg |
362 |
Q |
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| T |
52647577 |
atcaaatgcatgtatatttatgatacattattacataagcgtagtg |
52647532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 7346288 - 7346199
Alignment:
| Q |
79 |
tcctaatggtgtaacagtaggatccgatgaaaccaaagcatgctcacatcgcttgatagctttatgaagctccttcaaatgactatattt |
168 |
Q |
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| T |
7346288 |
tcctaatgatgtaacagtaggatctgaagaaaccaaggcatgttcacattgcttgatagctttatgaaggtccttcaaatgaccatattt |
7346199 |
T |
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