View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_1 (Length: 793)
Name: NF11396_high_1
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 709; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 18 - 786
Target Start/End: Complemental strand, 2024935 - 2024167
Alignment:
| Q |
18 |
aaatcattggtaatgcatacaagctgaaacacatcataactaatcctttatatctataaataatgtgttcccagttttcatgaaatccaccaagttctga |
117 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
2024935 |
aaatcattggcaatgcatacaagctgaaatacatcataactaatcctttctatctataaataatgtgttccaagttttcatgaaatccaccaagttttga |
2024836 |
T |
|
| Q |
118 |
ttcatctattgttaagtttttgaatctcagataagatggctaaggataagatggctaagagaggtaatcaactctatcttatatgtgttgaaagaaaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024835 |
ttcatctattgttaagtttttgaatctcagataagatggctaaggataagatggctaagagaggtaatcaactctatcttatatgtgttgaaagaaaatg |
2024736 |
T |
|
| Q |
218 |
ctcatttctacaaacactacacatgatttgcaatttttcatgaatgtaaagtaataatgcatgtttatgtttctgttttagctgtggctccaaagatgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024735 |
ctcatttctacaaacactacacatgatttgcaatttttcatgaatgtaaagtaataatgcatgtttatgtttctgttttagctgtggctccaaagatgac |
2024636 |
T |
|
| Q |
318 |
tcgtgtggaaggaattaagtgtgggaatattgatctgacattgacggctagagtaattcgcctatggagtgttcctgaccatacgaatccagccgaggag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2024635 |
tcgtgtggaaggaattaagtgtgggaatattgatctggcattgacggctagagtaattcgccaatggagtgttcctgaccatacgaatccagccgaggag |
2024536 |
T |
|
| Q |
418 |
ggaagtctgcacatgctcctgctcaatgaaaaggtagctctttcatgcttatctcatttttgttattagttttttatggtcaatctcataatgtagcatt |
517 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2024535 |
ggaagtctgcacatgctcctgctcgatgaaaaggtagctctttcatgcttatctcatttctgttattatttttttacggtcaatctcataatgtagcatt |
2024436 |
T |
|
| Q |
518 |
ttaatggaaaagaagatgtgtcgaagcttttcctgaaagtgatcagtcagttggaactactacatgttatgcaagagggatttttattcaatttgagcat |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2024435 |
ttaatggaaaagaagatgtgtcgaagcttttcctgaaagtgatcagtcagttggaactactacatgttatgtaagagggatttttattcaatttgagcat |
2024336 |
T |
|
| Q |
618 |
catcaagtttgaggttagtacaattggttctattaattctttttgttattttttggataggttagtgttggaacaatataacatgttttatgaggaaagc |
717 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
2024335 |
catcaagtttgaggttagtacaattggttctattaactctttttgttattttttggataggttggtgttggaacaaaataacatgttttatgaggaaagc |
2024236 |
T |
|
| Q |
718 |
atggatatgtttgcagttacatatacattgttttattttgaattcatacctttgaggattcctatgctt |
786 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2024235 |
atggatatgtttgcagttacatatacattgttttattttgaattcatacctttgaggattcctatgctt |
2024167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 10957387 - 10957492
Alignment:
| Q |
32 |
gcatacaagctgaaacacatcataactaatcctttatatctataaataatgtgttcccagttttcatgaaatccaccaagttctgattcatctattgtta |
131 |
Q |
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|||||||||||||||||||| ||| ||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||| || || ||||||||||| |
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| T |
10957387 |
gcatacaagctgaaacacattatagctaatccttgctatttataaatattgtgttcccagttttcatgaaattcatcaagttttgttttatctattgtta |
10957486 |
T |
|
| Q |
132 |
agtttt |
137 |
Q |
| |
|
||||| |
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| T |
10957487 |
tgtttt |
10957492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 395
Target Start/End: Complemental strand, 23319944 - 23319814
Alignment:
| Q |
265 |
aaagtaataatgcatgtttatgtttctgttttagctgtggctccaaagatgactcgtgtggaaggaattaagtgtgggaatattgatctgacattgacgg |
364 |
Q |
| |
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|||||| |||| ||||||||| || |||||||| | || |||| ||||||| ||||| ||||| ||||||||||||| ||||||| ||||||| | |
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| T |
23319944 |
aaagtactaattcatgtttatcttcgtgttttagttacagcaccaacgatgactactgtggctggaatcaagtgtgggaatactgatctggcattgacag |
23319845 |
T |
|
| Q |
365 |
ctagagtaattcgcctatggagtgttcctga |
395 |
Q |
| |
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|| ||||||| ||| |||||||||||||| |
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| T |
23319844 |
tcagggtaattcacctgtggagtgttcctga |
23319814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 395
Target Start/End: Complemental strand, 23330111 - 23329981
Alignment:
| Q |
265 |
aaagtaataatgcatgtttatgtttctgttttagctgtggctccaaagatgactcgtgtggaaggaattaagtgtgggaatattgatctgacattgacgg |
364 |
Q |
| |
|
|||||| |||| ||||||||| || |||||||| | || |||| ||||||| ||||| ||||| ||||||||||||| ||||||| ||||||| | |
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| T |
23330111 |
aaagtactaattcatgtttatcttcgtgttttagttacagcaccaacgatgactactgtggctggaatcaagtgtgggaatactgatctggcattgacag |
23330012 |
T |
|
| Q |
365 |
ctagagtaattcgcctatggagtgttcctga |
395 |
Q |
| |
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|| ||||||| ||| |||||||||||||| |
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|
| T |
23330011 |
tcagggtaattcacctgtggagtgttcctga |
23329981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 22005407 - 22005350
Alignment:
| Q |
579 |
acatgttatgcaagagggatttttattcaatttgagcatcatcaagtttgaggttagt |
636 |
Q |
| |
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|||||||| |||||| | | ||| ||||| |||||||| ||||||||||||||||||| |
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|
| T |
22005407 |
acatgttaagcaagatgaactttcattcagtttgagcaacatcaagtttgaggttagt |
22005350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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