View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_11 (Length: 518)
Name: NF11396_high_11
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 14347285 - 14347666
Alignment:
| Q |
13 |
tagggagtttgacaaaggtgaggactcattatggaatttgtccatcgatcgatctaacatcgtagatgagcatataatgcgtccaactgacgaagcaaaa |
112 |
Q |
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| T |
14347285 |
tagggagtttgacaaaggtgaggactcattgtggaatttgtccatcgatcgatctaacatcatagatgagcatataatgcgtccaactgacgaagcaaaa |
14347384 |
T |
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| Q |
113 |
tttgctagagctggggatattggtgtttgcaaagcactaacttctcacaatctgaggtctattgccatggttcatcatcttgggcatgcaattattcaaa |
212 |
Q |
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| T |
14347385 |
tttgctagagctggggatattggtgtttgcaaagcactaacttctcacaatctgaggtctattgccatggttcatcatcttgggcatgcaattattcaaa |
14347484 |
T |
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| Q |
213 |
aggatgttagcattgagactttaaggaacaaagtcgataacttagagaaagagttagatgccgaaaaagagaagttggccgctgcatattccaagttgaa |
312 |
Q |
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| T |
14347485 |
aggatgttagcattgacactttaaagaacaaaattgctaacttagagaaagaatt---ggctgaaaaaaacaagttagccactgtttattccaatttgaa |
14347581 |
T |
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| Q |
313 |
acaagagaagaaagatttgg-------ctgccaagtacaagactgagtctcttctttggactcaacaaaagaaaaagttggagga |
390 |
Q |
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| T |
14347582 |
aaaagagaagaaagatttggctgccaactgccaagtacaagactgagtctcttctttggactcaacaaaagaaaaagttggagga |
14347666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 14347943 - 14348030
Alignment:
| Q |
414 |
gttaatttcttgctgaaagattatgaatgctaactttacctgctcaacaagtattttcctttcttcttttttcttgttcaatatgatt |
501 |
Q |
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| T |
14347943 |
gttaatttcttgctgaatgattatgaatgctaactttaccttctcaacaagtattttgctttcttcttttttcttgttcaatatgatt |
14348030 |
T |
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