View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_15 (Length: 464)
Name: NF11396_high_15
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Original strand, 13704215 - 13704649
Alignment:
| Q |
15 |
caaagaagcttgcttttcaaagaatcaagaaagaaatttaataaagagaaagatgatgaaccaactttgaataagcccgaatatagaaagagttatgggt |
114 |
Q |
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| T |
13704215 |
caaagaagcttgcatgataaagaatgaagaacaaaatttgataaagagaaagatgatgaaccaactttgaatatgcccaactatagaaagagttacaggc |
13704314 |
T |
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| Q |
115 |
gtggaagaggacttattggtgctagaagtcgtgaagaataaaacaggcaagtgaagtggctgaatgctacaaatgtgacaaacaagggtattattagaat |
214 |
Q |
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| T |
13704315 |
gtggaataggacttattggtgctagaagacgtgaagagtaaaacaggcaagtgaactggctgaatgctacaaacgtgacaaacaagggtattattagaat |
13704414 |
T |
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| Q |
215 |
gaatgtcccaattgggaaagtgaaaatgcaaattttactgagtttgttgatacagaagaaatgtttcttcaacctcaagaaaaggtgcatacaacaataa |
314 |
Q |
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| T |
13704415 |
gaatgtcccaattgggaaattgaaaatgcaaattttactgagtttggtgatacagaagaaatgtttcttccagctcaagaaaaggtgcatacaacaataa |
13704514 |
T |
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| Q |
315 |
gaaaataagtatagttccttaagtcaagatgtagctatcacattataggaactaaaggttggatatttaattatcacgatgcatttttagaatcaatcga |
414 |
Q |
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| T |
13704515 |
gaaaataagtatagttccttaagtaaagatgtagctatcacattataggaactaaaggttggatatttaattatcacgatgcatttttagaatcaatcga |
13704614 |
T |
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| Q |
415 |
aggtggagataattccaagattcctgtgatgagaa |
449 |
Q |
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| T |
13704615 |
aggtggagatgattccaagattcctgtgatgagaa |
13704649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 24658830 - 24658787
Alignment:
| Q |
207 |
attagaatgaatgtcccaattgggaaagtgaaaatgcaaatttt |
250 |
Q |
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| T |
24658830 |
attagaatgaatgtcccattcgggaaagtgaaaatgcaaatttt |
24658787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 2610076 - 2610007
Alignment:
| Q |
210 |
agaatgaatgtcccaattgggaaagtgaaaatgcaaattttactgagtttgttgatacagaagaaatgtt |
279 |
Q |
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| T |
2610076 |
agaatgaatgtcccaatcgggaaagtaaaaatgcaaattttgcaaaatttgatgacacagaagaaatgtt |
2610007 |
T |
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