View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11396_high_16 (Length: 426)
Name: NF11396_high_16
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 899041 - 899425
Alignment:
| Q |
1 |
atcgttaccagcaatttcctcatcaatcttttcaccatccaactattttattttcatcttcagcttcatccaattttgtaaaactgttttaaaaatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
899041 |
atcgttaccagcaatttcctcatcaatcttttcaccatccaactattttattttcatcttcagcttcatccaattttgtaaaactgttttaaaaatcatc |
899140 |
T |
|
| Q |
101 |
ttttaatttttcagttttgcggactaaaatagaagtagttagtgtacatttagtttcacttataaatgagtgaatattgattatagaggtgtagaattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
899141 |
ttttaatttttcagttttgcggactaaaatagaagtagttagtgtacatttagtttcacttataaatgagtgaatattgattatagaggtgtagaattgc |
899240 |
T |
|
| Q |
201 |
tttagagtaaatttattttgtctcaaaatttaattctaatttgaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
899241 |
tttagagtaaatttattttgtctcaaaatttaattctaatttgaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgt |
899340 |
T |
|
| Q |
301 |
ttaattagtcattttggttttacgtatttaaataaatccctttagtttcaaaaattaaatgtacatcactctaattcaatactca |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
899341 |
ttaattagtcattttggttttacgtatttaaataaatccctttagtttcaaaaattaaatgtacatcactctaattcaatactca |
899425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 4799336 - 4799298
Alignment:
| Q |
384 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4799336 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4799298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 4804316 - 4804278
Alignment:
| Q |
384 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4804316 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4804278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 4800493 - 4800455
Alignment:
| Q |
384 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
422 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
4800493 |
catcgtttgatgcaccaatcgatatctttcttttctctc |
4800455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 22332128 - 22332166
Alignment:
| Q |
384 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22332128 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
22332166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 23834053 - 23834015
Alignment:
| Q |
384 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23834053 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
23834015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University