View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_high_21 (Length: 324)

Name: NF11396_high_21
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_high_21
NF11396_high_21
[»] chr7 (15 HSPs)
chr7 (19-306)||(29275273-29275560)
chr7 (29-179)||(29279119-29279266)
chr7 (71-179)||(29269758-29269866)
chr7 (199-306)||(28612160-28612267)
chr7 (194-303)||(29270587-29270696)
chr7 (194-283)||(29288411-29288500)
chr7 (117-183)||(28612975-28613041)
chr7 (194-283)||(29282972-29283061)
chr7 (109-177)||(28621251-28621319)
chr7 (109-183)||(28614653-28614726)
chr7 (223-283)||(28623328-28623388)
chr7 (70-179)||(29282136-29282245)
chr7 (109-179)||(29287629-29287699)
chr7 (86-150)||(29286976-29287040)
chr7 (199-276)||(28615439-28615516)
[»] chr1 (3 HSPs)
chr1 (109-179)||(49149566-49149636)
chr1 (87-179)||(4235404-4235496)
chr1 (87-183)||(49144997-49145093)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 29275273 - 29275560
Alignment:
Q  19 taactttcctaacactcccttcaattatttcaccggttagttttacttatcagcaatgaggaaggttgattgggaaaatttagaatcctctcctcttagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275273 taactttcctaacactcccttcaattatttcaccggttagttttacttatcagcaatgaggaaggttgattgggaaaatttagaatcctctcctcttagt 29275372  T
Q  119 ttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttgacttggtttcttttgaaattggaactggacgccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29275373 ttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtagtgtgcaagacttgacttggtttcttttcaaattggaactggacgccca 29275472  T
Q  219 gagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaactagcgattcaatttctgtgcca 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||    
T  29275473 gagcgaaaaagttgaacaaatcaacaaacttgagagtttggaaagcaacattttatttgttggaactggcaatttaatttctgtgcca 29275560  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 29279119 - 29279266
Alignment:
Q  29 aacactcccttcaattatttcaccggttagttttacttatcagcaatgaggaaggttgattgggaaaatttagaatcctctcctcttagtttggttcttg 128  Q
    ||||||||||| |||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  29279119 aacactccctttaattatttcacctgttagttttacttatca---atgaggaaggttgattgggaaaatttagaagcatatcctcttagttttgttcttg 29279215  T
Q  129 ataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaaga 179  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  29279216 ataagttggaagaacacatagatcatgttaggtttggtgtggtgtgtaaga 29279266  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 29269758 - 29269866
Alignment:
Q  71 gcaatgaggaaggttgattgggaaaatttagaatcctctcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtgg 170  Q
    |||||||| ||||| ||||||  ||||||||| | ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  29269758 gcaatgagaaaggtagattggtcaaatttagattgctaccctcttagtttggttcttgacgagttggaagaacacatagatcatgttaggtttggtgtgg 29269857  T
Q  171 tgtgcaaga 179  Q
    |||||||||    
T  29269858 tgtgcaaga 29269866  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 28612267 - 28612160
Alignment:
Q  199 aaattggaactggacgcccagagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaactagcgattcaattt 298  Q
    |||||||||||||| | |||||| |||||| ||||||| || ||||||||||||||||||||| |||||||||||||||| |||| | | ||||||||||    
T  28612267 aaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaattggtgattcaattt 28612168  T
Q  299 ctgtgcca 306  Q
    ||||||||    
T  28612167 ctgtgcca 28612160  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 29270587 - 29270696
Alignment:
Q  194 ttttgaaattggaactggacgcccagagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaactagcgattc 293  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||| ||||   | |||||    
T  29270587 ttttcaaaatggaaatggacgcccagagcggaaaagttgaacaaataaaaaaacttgagagtttagagaacaacattttatttgtcggaatcggtgattc 29270686  T
Q  294 aatttctgtg 303  Q
    ||||||||||    
T  29270687 aatttctgtg 29270696  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 29288411 - 29288500
Alignment:
Q  194 ttttgaaattggaactggacgcccagagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaa 283  Q
    |||| |||||||||||||| |||||||| |||||| ||||||| || ||||||||||||||||||||| |||||||||||||||| ||||    
T  29288411 ttttcaaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaa 29288500  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 28613041 - 28612975
Alignment:
Q  117 gtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttg 183  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  28613041 gtttggttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttg 28612975  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 29282972 - 29283061
Alignment:
Q  194 ttttgaaattggaactggacgcccagagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaa 283  Q
    |||| |||||||||||||| |||||||| |||||| | ||||| || ||||||||||||||||||||| ||| |||||||||||| ||||    
T  29282972 ttttcaaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaa 29283061  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 28621251 - 28621319
Alignment:
Q  109 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaa 177  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||| ||||||||    
T  28621251 tcctcttagtttggttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaa 28621319  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 28614653 - 28614726
Alignment:
Q  109 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttg 183  Q
    |||||||| |||||||||||  ||||| ||||||||||||||||||||||||||  |||| ||||||||||||||    
T  28614653 tcctcttaatttggttcttgc-aagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttg 28614726  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 28623328 - 28623388
Alignment:
Q  223 ggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttatttgttggaa 283  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||    
T  28623328 ggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacattttttttgttggaa 28623388  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 29282136 - 29282245
Alignment:
Q  70 agcaatgaggaaggttgattgggaaaatttagaatcctct-cctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgt 168  Q
    ||||||||||||||||||||||| ||||||| |||   || |||||||||||||||||||| |||||||||| ||| | |||  ||||||||||  ||||    
T  29282136 agcaatgaggaaggttgattgggcaaattta-aatgaacttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggttcggtgt 29282234  T
Q  169 ggtgtgcaaga 179  Q
     ||||| ||||    
T  29282235 tgtgtgtaaga 29282245  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 29287629 - 29287699
Alignment:
Q  109 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaaga 179  Q
    ||||||||||||||||||||| |||||||||| ||| | |||  ||||||||||| |||||||||| ||||    
T  29287629 tcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggtttggtgtggtgtgtaaga 29287699  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 29286976 - 29287040
Alignment:
Q  86 gattgggaaaatttagaatcctctcctcttagtttggttcttgataagttggaagaacacataga 150  Q
    ||||||| ||||||||||| ||  ||||| |||||||| ||||| ||||||||||||||||||||    
T  29286976 gattgggcaaatttagaatgctaccctctcagtttggtgcttgacaagttggaagaacacataga 29287040  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 28615439 - 28615516
Alignment:
Q  199 aaattggaactggacgcccagagcggaaaagttgaacaaatcaacaaacttgagagtttggaaaacaacattttattt 276  Q
    |||||| |||||||| || |||| |||||| ||| |||||| ||||  ||| ||||||||| | ||||||||||||||    
T  28615439 aaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttattt 28615516  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 49149566 - 49149636
Alignment:
Q  109 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaaga 179  Q
    ||||||| ||||||||||||| | ||| ||||||||||||||||||||| ||||| |||  ||||||||||    
T  49149566 tcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggtgctgtgtgcaaga 49149636  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 4235404 - 4235496
Alignment:
Q  87 attgggaaaatttagaatcctctcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaaga 179  Q
    |||||| |||||||||| |   ||||||||||||| | ||||| ||||| |||||||||||| |||||||| ||||| |||  ||||||||||    
T  4235404 attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaaga 4235496  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 49144997 - 49145093
Alignment:
Q  87 attgggaaaatttagaatcctctcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttg 183  Q
    |||||| |||||||||| ||  | |||||| |||| ||||||| ||||| ||||||||||||||| |||||  |||| |||  ||||||||||||||    
T  49144997 attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttg 49145093  T

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