View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_24 (Length: 319)
Name: NF11396_high_24
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 49956484 - 49956184
Alignment:
| Q |
1 |
gatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagttttgaaagaataa |
100 |
Q |
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| T |
49956484 |
gatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagttttgaaagaataa |
49956385 |
T |
|
| Q |
101 |
aacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatgaagcaagtctaagt |
200 |
Q |
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| T |
49956384 |
aacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatgaagcaagtctaagt |
49956285 |
T |
|
| Q |
201 |
cccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccctctgttagcacaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956284 |
cccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccctctgttagcacaataa |
49956185 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
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| |
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|
| T |
49956184 |
c |
49956184 |
T |
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