View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_high_28 (Length: 303)

Name: NF11396_high_28
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_high_28
NF11396_high_28
[»] chr3 (1 HSPs)
chr3 (1-291)||(52583983-52584273)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 52583983 - 52584273
Alignment:
Q  1 cagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatttttcattcattctatcaatcacatttccaccaacatcaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52583983 cagaggagagtgttctagcacctgttctactcccatgaaacaacttctcagcatatttttcattcattctatcaatcacatttccaccaacatcaacaag 52584082  T
Q  101 atcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacggaaccaaaactctcacttccataagaagtagaagtagaacggttcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584083 atcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacagaaccaaaactctcacttccataagaagtagaagtagaacggttcaat 52584182  T
Q  201 aataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcacttgttagattctccaccacaggtt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52584183 aataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcactagttagattctccaccacaggtt 52584273  T

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