View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_29 (Length: 301)
Name: NF11396_high_29
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 43777834 - 43777563
Alignment:
| Q |
11 |
cacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaagagttatggcagtgagccatgtgaaaaaatgttttgcgatgatgttg |
110 |
Q |
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| T |
43777834 |
cacagagttgagaatttaagtggagattaagaaaagtta---aatattaaaaagagttatggcagtgagccatgtgaaaaaatgttttgcgatgatgttg |
43777738 |
T |
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| Q |
111 |
gtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactagaacatgtttcagagacatttttc |
210 |
Q |
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| T |
43777737 |
gtgattatgctagttgtaactcaagctgatgctttttcgacattttttattaattgtcgtttcgaatgtttaactagaacatgtttcagagacatttttc |
43777638 |
T |
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| Q |
211 |
attatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaatgatagttgatag |
285 |
Q |
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| T |
43777637 |
attatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaataatagttgatag |
43777563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 43781380 - 43781181
Alignment:
| Q |
11 |
cacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaagagttatggcagtgagccatgtgaaaaaatgttttgcgatgatgttg |
110 |
Q |
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| T |
43781380 |
cacaaagttgagaattttagtggagattaagaaaagttaaaaaatattaaaaagagttatggtagtgagccaagtgaaaaaatgttttacgatgatgttg |
43781281 |
T |
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| Q |
111 |
gtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactagaacatgtttcagagacatttttc |
210 |
Q |
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| T |
43781280 |
gtgattatgctagttgtaactcaacctcatgctttttcgccattt---attgaatgtcgtgtcggatgtttaacgataacatgttttagagacattttcc |
43781184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 43770398 - 43770344
Alignment:
| Q |
11 |
cacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaaga |
65 |
Q |
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|||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
43770398 |
cacaaagttgagaattttagtggtgattaagaaaagttaaaaaatattaaaaaga |
43770344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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