View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_3 (Length: 696)
Name: NF11396_high_3
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 581
Target Start/End: Complemental strand, 32011207 - 32010642
Alignment:
| Q |
16 |
caaaatatgctaatccactttattttgacccacatcaccatcaactcgcctaaggtgtagcggtgcagggaagccaacttaggtaggtgggttgaaactt |
115 |
Q |
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| T |
32011207 |
caaaatatgttaatccactttattttgacccacatcaccatcaactcgcctaaggtgtagcggtgcagggaagccaacttaggtaggtgggttgaaactt |
32011108 |
T |
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| Q |
116 |
ccttcccacctcttgacgggttagcgagctgattcgttaataacaaaaaatgttaacgtattaatttttaaaagtttgctcgttaattgggctataacnn |
215 |
Q |
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| T |
32011107 |
ccttcccacctcttgacgggttagcgagctgattcgttaataacaaaaaatgttaacgtattaatttttaaatttttgctcgttaattgggatataacaa |
32011008 |
T |
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| Q |
216 |
nnnnntaggactcgacaaatgagtttgatctattcgaaattgactgtctcgtgagcnnnnnnngaacaattgtcggatcaaatcgggttaagcgagtaga |
315 |
Q |
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| T |
32011007 |
aaaaataggacttgacaaatgagtttgatctattcgaaatcgactgtcccgtgagcaaaaaaagaacaattgtcagatcaaatcgggttaagcgagtaga |
32010908 |
T |
|
| Q |
316 |
aaggtgaaagaaacaacttgtgttgggttagcatgggtggttatgggtgaaggaattaacaccgatattaataatcataacctactcgtacactcgttac |
415 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32010907 |
tgggtgaaagaaacaacttgtgttgggttagtatgggtggttctgggtgaaggaattaacaccgatattaataatcataacctacttgtacactcgttac |
32010808 |
T |
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| Q |
416 |
aaaatattgggccaacatggtttaacacccataggccaaaataatttcagacttggcccactcaacctaacacaaacaccatacacatactactaatgtt |
515 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
32010807 |
aaaatattgggccaacatggtttaacacccttaggccaaaataattttagactttgccaactcaacctaacacaaacaccatatacatactactaatgtt |
32010708 |
T |
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| Q |
516 |
gaaattatctactctctcagccctagtttctttattcagttccgccatttcaccaatctttctact |
581 |
Q |
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| T |
32010707 |
gaaattatctactctctcagccctagtttctttattcagttgcgccatttcaccgatctttctact |
32010642 |
T |
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