View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_high_30 (Length: 301)

Name: NF11396_high_30
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_high_30
NF11396_high_30
[»] chr2 (31 HSPs)
chr2 (21-301)||(26712687-26712967)
chr2 (187-285)||(42297341-42297439)
chr2 (189-298)||(27483840-27483949)
chr2 (231-300)||(17496503-17496572)
chr2 (235-299)||(24109092-24109156)
chr2 (164-223)||(9124516-9124575)
chr2 (249-292)||(19643402-19643445)
chr2 (231-298)||(25905643-25905710)
chr2 (237-279)||(24386335-24386377)
chr2 (233-299)||(33013287-33013353)
chr2 (251-300)||(14867576-14867625)
chr2 (251-292)||(20568419-20568460)
chr2 (252-300)||(18038704-18038752)
chr2 (248-292)||(24850337-24850381)
chr2 (253-300)||(22683770-22683817)
chr2 (247-297)||(22311241-22311291)
chr2 (251-292)||(15668295-15668336)
chr2 (251-300)||(17569235-17569284)
chr2 (241-294)||(24227476-24227529)
chr2 (251-292)||(24440427-24440468)
chr2 (251-292)||(24576437-24576478)
chr2 (251-292)||(27639972-27640013)
chr2 (251-300)||(33241005-33241054)
chr2 (251-300)||(33248926-33248975)
chr2 (251-292)||(40782859-40782900)
chr2 (251-292)||(44881543-44881584)
chr2 (255-292)||(45086806-45086843)
chr2 (241-301)||(18115064-18115124)
chr2 (243-279)||(22108322-22108358)
chr2 (251-291)||(24158215-24158255)
chr2 (207-299)||(28574403-28574494)
[»] chr3 (26 HSPs)
chr3 (164-295)||(27686063-27686194)
chr3 (160-274)||(10686867-10686981)
chr3 (241-297)||(20311384-20311440)
chr3 (163-301)||(9828988-9829123)
chr3 (161-296)||(20648955-20649090)
chr3 (251-292)||(14073086-14073127)
chr3 (253-298)||(14426926-14426971)
chr3 (251-300)||(19225783-19225832)
chr3 (251-292)||(19705765-19705806)
chr3 (251-292)||(20725491-20725532)
chr3 (251-292)||(49553213-49553254)
chr3 (241-300)||(4698636-4698695)
chr3 (254-292)||(20418573-20418611)
chr3 (251-292)||(3087872-3087913)
chr3 (251-292)||(4242921-4242962)
chr3 (264-301)||(8108819-8108856)
chr3 (251-292)||(10852160-10852201)
chr3 (259-292)||(11514193-11514226)
chr3 (251-292)||(14077101-14077142)
chr3 (251-292)||(19249132-19249173)
chr3 (251-292)||(26417410-26417451)
chr3 (251-292)||(28582500-28582541)
chr3 (251-292)||(31303782-31303823)
chr3 (251-292)||(41495367-41495408)
chr3 (251-300)||(54284713-54284762)
chr3 (267-299)||(12129165-12129197)
[»] chr1 (19 HSPs)
chr1 (160-295)||(25517667-25517802)
chr1 (251-300)||(21617044-21617093)
chr1 (240-295)||(1634959-1635014)
chr1 (244-301)||(9557931-9557986)
chr1 (255-297)||(12398137-12398179)
chr1 (251-292)||(1090187-1090228)
chr1 (251-292)||(33255998-33256039)
chr1 (251-292)||(33276170-33276211)
chr1 (251-294)||(1812482-1812525)
chr1 (241-280)||(22669093-22669132)
chr1 (254-292)||(9659071-9659109)
chr1 (250-292)||(26701791-26701833)
chr1 (251-292)||(10757797-10757838)
chr1 (251-292)||(16478412-16478453)
chr1 (256-297)||(19018795-19018836)
chr1 (251-300)||(19227814-19227863)
chr1 (251-292)||(38282976-38283017)
chr1 (251-292)||(48704593-48704634)
chr1 (235-299)||(34523845-34523909)
[»] chr7 (19 HSPs)
chr7 (160-301)||(22731762-22731904)
chr7 (241-280)||(23183450-23183489)
chr7 (231-301)||(5740776-5740846)
chr7 (251-292)||(2913348-2913389)
chr7 (251-292)||(15304940-15304981)
chr7 (251-291)||(9396648-9396688)
chr7 (251-298)||(15756951-15756999)
chr7 (239-298)||(7144618-7144677)
chr7 (249-292)||(13880984-13881027)
chr7 (251-292)||(1877990-1878031)
chr7 (251-292)||(4550030-4550071)
chr7 (251-292)||(9069963-9070004)
chr7 (241-294)||(10646505-10646558)
chr7 (251-292)||(12366477-12366518)
chr7 (251-292)||(14304110-14304151)
chr7 (259-292)||(16412418-16412451)
chr7 (251-292)||(22577747-22577788)
chr7 (251-291)||(12222202-12222242)
chr7 (237-273)||(19650700-19650736)
[»] chr5 (11 HSPs)
chr5 (202-294)||(22186347-22186439)
chr5 (162-294)||(18807379-18807510)
chr5 (249-292)||(642416-642459)
chr5 (249-292)||(9398467-9398510)
chr5 (249-292)||(21099413-21099456)
chr5 (210-301)||(22254385-22254475)
chr5 (256-298)||(18821097-18821139)
chr5 (251-292)||(17815357-17815398)
chr5 (251-295)||(16607911-16607955)
chr5 (251-291)||(25096528-25096568)
chr5 (251-291)||(25154498-25154538)
[»] chr8 (15 HSPs)
chr8 (218-298)||(22881678-22881758)
chr8 (239-298)||(12843492-12843551)
chr8 (252-298)||(23584604-23584650)
chr8 (251-296)||(24122156-24122201)
chr8 (241-301)||(17872033-17872093)
chr8 (249-291)||(18773017-18773059)
chr8 (249-294)||(12863774-12863819)
chr8 (251-292)||(17916554-17916595)
chr8 (237-298)||(19342213-19342274)
chr8 (251-292)||(22461348-22461389)
chr8 (251-292)||(23192326-23192367)
chr8 (251-292)||(23352811-23352852)
chr8 (251-292)||(26833442-26833483)
chr8 (254-298)||(26576966-26577010)
chr8 (240-301)||(29092622-29092679)
[»] chr6 (11 HSPs)
chr6 (251-294)||(14315276-14315319)
chr6 (251-292)||(3680869-3680910)
chr6 (240-301)||(30701139-30701200)
chr6 (251-298)||(1559376-1559424)
chr6 (241-301)||(23600724-23600784)
chr6 (249-292)||(15987586-15987629)
chr6 (249-294)||(4312758-4312803)
chr6 (259-292)||(15477550-15477583)
chr6 (251-292)||(17928197-17928238)
chr6 (251-292)||(26186072-26186113)
chr6 (251-291)||(24399045-24399085)
[»] chr4 (24 HSPs)
chr4 (237-295)||(14117125-14117183)
chr4 (249-292)||(17526160-17526203)
chr4 (250-296)||(4046211-4046257)
chr4 (239-301)||(8863866-8863928)
chr4 (241-298)||(11442778-11442835)
chr4 (241-298)||(11550860-11550917)
chr4 (249-298)||(12380542-12380591)
chr4 (252-292)||(17787714-17787754)
chr4 (249-292)||(6642072-6642115)
chr4 (249-292)||(23088013-23088056)
chr4 (251-292)||(2652128-2652169)
chr4 (241-298)||(9883054-9883111)
chr4 (251-292)||(14356842-14356883)
chr4 (255-292)||(14833784-14833821)
chr4 (251-292)||(14902169-14902210)
chr4 (259-300)||(19809928-19809969)
chr4 (259-300)||(19818920-19818961)
chr4 (251-292)||(19888817-19888858)
chr4 (251-292)||(19911623-19911664)
chr4 (241-298)||(27941205-27941262)
chr4 (251-292)||(45833783-45833824)
chr4 (259-292)||(54680292-54680325)
chr4 (249-297)||(11449131-11449179)
chr4 (262-298)||(47576018-47576054)
[»] scaffold0194 (1 HSPs)
scaffold0194 (166-289)||(6402-6525)
[»] scaffold0010 (1 HSPs)
scaffold0010 (241-299)||(139505-139562)
[»] scaffold0364 (1 HSPs)
scaffold0364 (251-286)||(10097-10132)
[»] scaffold0329 (1 HSPs)
scaffold0329 (240-294)||(4660-4714)
[»] scaffold0758 (1 HSPs)
scaffold0758 (251-292)||(4638-4679)
[»] scaffold0522 (2 HSPs)
scaffold0522 (259-292)||(3940-3973)
scaffold0522 (252-292)||(11223-11263)
[»] scaffold0488 (1 HSPs)
scaffold0488 (251-292)||(11280-11321)
[»] scaffold0337 (1 HSPs)
scaffold0337 (251-292)||(15055-15096)
[»] scaffold0334 (1 HSPs)
scaffold0334 (251-292)||(10187-10228)
[»] scaffold0056 (1 HSPs)
scaffold0056 (251-292)||(35853-35894)
[»] scaffold0047 (1 HSPs)
scaffold0047 (255-292)||(30618-30655)
[»] scaffold0022 (1 HSPs)
scaffold0022 (251-292)||(159466-159507)
[»] scaffold0020 (1 HSPs)
scaffold0020 (251-292)||(145263-145304)
[»] scaffold0018 (2 HSPs)
scaffold0018 (251-292)||(52899-52940)
scaffold0018 (251-292)||(56851-56892)
[»] scaffold0005 (1 HSPs)
scaffold0005 (255-292)||(5878-5915)
[»] scaffold0003 (1 HSPs)
scaffold0003 (259-292)||(1130-1163)
[»] scaffold0002 (1 HSPs)
scaffold0002 (251-292)||(116182-116223)
[»] scaffold1782 (1 HSPs)
scaffold1782 (252-292)||(736-776)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 26712687 - 26712967
Alignment:
Q  21 cggactgggcctccaccaacaaacatcagaacaggaataaagcacaataacccagtaggcatttcaatgaagaatgcacgagaagctctatgaggtttac 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26712687 cggactgggcctccaccaacaaacatccgaacaggaataaagcacaataacccagtaggcatttcaatgaagaatgcacgagaagctctatgaggtttac 26712786  T
Q  121 tacatagaagtacgcccaagatcaatctccgagtctcggaagcttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaa 220  Q
    |||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26712787 tacatagaagtacgccaaagatcaatctccgagtcttataagcttctcttttgcttcagatgcttctttatgtgttcagagtcttaatgtttcaaaacaa 26712886  T
Q  221 aaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26712887 aaacttgatctaagaattagaatttaattatatggtcatacacacttgaacacatattagcatattcaattgttcttttat 26712967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 42297439 - 42297341
Alignment:
Q  187 tttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatat 285  Q
    |||| ||||||| |||||| || ||| | |||||||||| ||| ||||||||||||||||||||||||||  ||||||||| |||| | ||||||||||    
T  42297439 tttaagcgttcaaagtcttcatattttagaacaaaaacttgatttaagaattagaatttaattatatggttctgcacactttaacatacattagcatat 42297341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 27483949 - 27483840
Alignment:
Q  189 tatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattca 288  Q
    |||| ||||||| |||| | |||||| ||| |||||| ||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||  ||||  |    
T  27483949 tatgtgttcagaatcttgaagtttcagaaccaaaacttgattttagaattagaatttaattttatggtcctgcacacttgaacacacattaatatatcaa 27483850  T
Q  289 attgttcttt 298  Q
    ||||||||||    
T  27483849 attgttcttt 27483840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 17496503 - 17496572
Alignment:
Q  231 taagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||| ||||||||||||| ||| |||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  17496503 taagagttagaatttaattctatagtcatgcatacttgaacacacattaacatgttcaattgttctttta 17496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 24109156 - 24109092
Alignment:
Q  235 aattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttt 299  Q
    |||| |||||||||| |||| || ||||||||||||||| ||||| ||||||| |||||||||||    
T  24109156 aattggaatttaattttatgatcctgcacacttgaacacttattaacatattctattgttctttt 24109092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 9124516 - 9124575
Alignment:
Q  164 ttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaa 223  Q
    ||||||||||||||||||  ||  |||||||||||||||||| |||||||||||| ||||    
T  9124516 ttctcttttgcttcagattatttcttatgcgttcagagtcttgatgtttcaaaactaaaa 9124575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 19643445 - 19643402
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  19643445 tatatggtcctgcacacttgaacaaatattagcatattcaattg 19643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 25905710 - 25905643
Alignment:
Q  231 taagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||| ||||||||||||||||||||| |||| |  |||||||| |||| ||| ||||||||||||||    
T  25905710 taagagttagaatttaattatatggtcttgcatatctgaacacacattaacattttcaattgttcttt 25905643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 24386335 - 24386377
Alignment:
Q  237 ttagaatttaattatatggtcatgcacacttgaacacatatta 279  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  24386335 ttagaatttaattctatggtcatgcacacttgaacacacatta 24386377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 33013353 - 33013287
Alignment:
Q  233 agaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttt 299  Q
    ||||||| ||||||||||| ||||| ||||  |||||||||| |||| |||||| ||||||||||||    
T  33013353 agaattataatttaattatgtggtcttgcattcttgaacacacattaacatattgaattgttctttt 33013287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 14867576 - 14867625
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    |||| ||||||||||||||||| |||||||||||| |||||| |||||||    
T  14867576 tatgatcatgcacacttgaacaaatattagcatatccaattgatctttta 14867625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 20568460 - 20568419
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  20568460 tatggtcatgtacacttgaacaaatattagcatattcaattg 20568419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 18038704 - 18038752
Alignment:
Q  252 atggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| ||||||||||||| | |||||||||| ||||||||||||||    
T  18038704 atggtcacgcacacttgaacatacattagcatatccaattgttctttta 18038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 24850381 - 24850337
Alignment:
Q  248 ttatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||    
T  24850381 ttatatggtcctgcacacttgaacaaatattagcatatccaattg 24850337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 22683770 - 22683817
Alignment:
Q  253 tggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    |||||||||||||||||||| ||||||||||||  ||||| |||||||    
T  22683770 tggtcatgcacacttgaacaaatattagcatatctaattgatctttta 22683817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 22311291 - 22311241
Alignment:
Q  247 attatatggtcatgcacacttgaacacatattagcatattcaattgttctt 297  Q
    |||||||| || |||||||||||||| ||||||| |||| |||||||||||    
T  22311291 attatatgatcctgcacacttgaacaaatattagtatatccaattgttctt 22311241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 15668336 - 15668295
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  15668336 tatggtcctgcacacttgaacaaatattagcatatccaattg 15668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 17569284 - 17569235
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||||| ||||||| |||| ||||||||||||||| ||||| |||||    
T  17569284 tatggtcatacacacttaaacatatattagcatattcacttgttttttta 17569235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 24227529 - 24227476
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    ||||||||| ||||||  | | |||||||||||| |||||||||||||||||||    
T  24227529 aatttaattttatggttcttcgcacttgaacacacattagcatattcaattgtt 24227476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 24440468 - 24440427
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  24440468 tatggtcctgctcacttgaacaaatattagcatattcaattg 24440427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 24576437 - 24576478
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  24576437 tatggtcatgtacacttgaacaaatattagcatatccaattg 24576478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 27640013 - 27639972
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||| ||||||||||||    
T  27640013 tatggtcctgcacacttgaacaaatattaacatattcaattg 27639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 33241005 - 33241054
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| |||||| ||||||| |||||||||||| |||||| |||||||    
T  33241005 tatggtcttgcacatttgaacaaatattagcatatccaattgatctttta 33241054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 33248926 - 33248975
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| |||||| ||||||| |||||||||||| |||||| |||||||    
T  33248926 tatggtcttgcacatttgaacaaatattagcatatccaattgatctttta 33248975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 40782859 - 40782900
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  40782859 tatggtcatgtacacttgaacaaatattagcatatccaattg 40782900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 44881543 - 44881584
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  44881543 tatggtcctgcacacttgaacaaatattagcatatccaattg 44881584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 45086843 - 45086806
Alignment:
Q  255 gtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  45086843 gtcatgtacacttgaacaaatattagcatattcaattg 45086806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 18115064 - 18115124
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||||||| ||||||||||||||| |||| |||||  ||  ||||| |||||||||    
T  18115064 aatttaattatatagtcatgcacacttgagcacacattagagtacccaattattcttttat 18115124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 22108358 - 22108322
Alignment:
Q  243 tttaattatatggtcatgcacacttgaacacatatta 279  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  22108358 tttaattatatgatcatgcacacttgaacacacatta 22108322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 24158215 - 24158255
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    ||||||| |||||||||||||| |||||||||||| |||||    
T  24158215 tatggtcctgcacacttgaacaaatattagcatatccaatt 24158255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 28574494 - 28574403
Alignment:
Q  207 atgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttt 299  Q
    |||||||| | | |||||| ||| ||||||| ||||||||||  ||| ||| ||||  |||||||||| ||||  ||||||||||||||||||    
T  28574494 atgtttcagacccaaaacttgatttaagaataagaatttaatc-tattgtcctgcattcttgaacacacattactatattcaattgttctttt 28574403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 27686063 - 27686194
Alignment:
Q  164 ttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcac 263  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||| ||| ||| |||||| ||| ||||| ||||||||||||| ||||||| |||||    
T  27686063 ttctcttttgcttcagatgcttccttatgcgtttaaagtcttaatgtctcacaaccaaaacttgatttaagagttagaatttaattctatggtcctgcac 27686162  T
Q  264 acttgaacacatattagcatattcaattgttc 295  Q
    |||||||| || |||| |||||| ||||||||    
T  27686163 acttgaacgcacattaacatatttaattgttc 27686194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 10686867 - 10686981
Alignment:
Q  160 aagcttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcat 259  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||| ||| |||||| ||| || |||||| ||||||||||||||||| |    
T  10686867 aagcttctcttttgcttcagatgcttccttatgtgtttagagtcttgatgtttcataaccaaaacttgatttacgaattataatttaattatatggtcct 10686966  T
Q  260 gcacacttgaacaca 274  Q
    |||||||||||||||    
T  10686967 gcacacttgaacaca 10686981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 20311440 - 20311384
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctt 297  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||    
T  20311440 aattttattttatggtcatgcacacttgaacatatattagcatatccaattgttctt 20311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 301
Target Start/End: Complemental strand, 9829123 - 9828988
Alignment:
Q  163 cttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgca 262  Q
    ||||||||||| |||||||| |   |||| | || ||||| || |||||||| ||| |||||| |   |||| |||||||||||||||||||||| ||||    
T  9829123 cttctcttttgattcagatgttgtcttatacatttagagttttgatgtttcataaccaaaacttggcttaaggattagaatttaattatatggtc-tgca 9829025  T
Q  263 cacttgaacacatattagcatattcaattgttcttttat 301  Q
     ||||||||||  ||||||||||  ||||||||||||||    
T  9829024 aacttgaacac--attagcatatctaattgttcttttat 9828988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 20648955 - 20649090
Alignment:
Q  161 agcttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatg 260  Q
    ||||||||  ||||||||||| || | |||||||||||||||||| ||  ||||  |  | || | ||  |||||||  | |||||||| |||| || ||    
T  20648955 agcttctcacttgcttcagattctaccttatgcgttcagagtcttcataattcaggatcataatttgacttaagaatagggatttaattctatgatcctg 20649054  T
Q  261 cacacttgaacacatattagcatattcaattgttct 296  Q
    || |||| ||||||||||||||||||||||||||||    
T  20649055 catacttaaacacatattagcatattcaattgttct 20649090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 14073086 - 14073127
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  14073086 tatggtcatgcacacttgaacaaatattagcatatccaattg 14073127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 14426971 - 14426926
Alignment:
Q  253 tggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||    
T  14426971 tggtcctgcacacttgaacatatattagcatatccaattgttcttt 14426926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 19225783 - 19225832
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| |||||||    
T  19225783 tatggtcttgcgcacttgaacaaatattagcatattcaattgatctttta 19225832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 19705765 - 19705806
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  19705765 tatggtcatgcacacttgaacaaatattagcatatccaattg 19705806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 20725491 - 20725532
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  20725491 tatggtcctgcacacttgaacaaatattagcatattcaattg 20725532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 49553254 - 49553213
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  49553254 tatggtcatgtacacttgaacaaatattagcatattcaattg 49553213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 4698695 - 4698636
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||||| ||||||  |||||||||||||| | |||||  ||||||||||||||||||    
T  4698695 aatttaattttatggttttgcacacttgaacatacattagagtattcaattgttctttta 4698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 20418573 - 20418611
Alignment:
Q  254 ggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  20418573 ggtcctgcacacttgaacaaatattagcatattcaattg 20418611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 3087872 - 3087913
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  3087872 tatggtcctgcacacttgaacaaatattagcatatccaattg 3087913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 4242962 - 4242921
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  4242962 tatggtcctgcacacttgaacaaatattagcatatccaattg 4242921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 8108856 - 8108819
Alignment:
Q  264 acttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  8108856 acttgaacacacattagcatattccattgttcttttat 8108819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 10852160 - 10852201
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  10852160 tatggtcctgcacacttgaacaaatattagcatatccaattg 10852201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 11514193 - 11514226
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  11514193 tgcacacttgaacaaatattagcatattcaattg 11514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 14077142 - 14077101
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| ||||||||| |||||||||    
T  14077142 tatggtcctgcacacttgaacaaatattagcacattcaattg 14077101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 19249173 - 19249132
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  19249173 tatggtcctgcacacttgaacaaatattagcatatccaattg 19249132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 26417451 - 26417410
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  26417451 tatggtcctgcacacttgaacaaatattagcatatccaattg 26417410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 28582500 - 28582541
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  28582500 tatggtcatgtacacttgaacaaatattagcatatccaattg 28582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 31303782 - 31303823
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  31303782 tatggtcatgtacacttgaacaaatattaacatattcaattg 31303823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 41495367 - 41495408
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  41495367 tatggtcttgtacacttgaacaaatattagcatattcaattg 41495408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 54284762 - 54284713
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| |||||||||| ||| |||||||||||| |||||| |||||||    
T  54284762 tatggtcctgcacacttggacaaatattagcatatccaattgatctttta 54284713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 12129197 - 12129165
Alignment:
Q  267 tgaacacatattagcatattcaattgttctttt 299  Q
    |||||| ||||||||||||||||||||||||||    
T  12129197 tgaacatatattagcatattcaattgttctttt 12129165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 25517667 - 25517802
Alignment:
Q  160 aagcttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcat 259  Q
    ||||||||||||||||||||||| |   ||||| ||||| |||||| |||||||| ||| |||||| ||| ||||  ||||||||||||| ||| ||| |    
T  25517667 aagcttctcttttgcttcagatgttatcttatgtgttcaaagtcttgatgtttcagaactaaaacttgatttaagggttagaatttaattctatagtcct 25517766  T
Q  260 gcacacttgaacacatattagcatattcaattgttc 295  Q
    ||||||||||||||| |||| ||||| |||||||||    
T  25517767 gcacacttgaacacacattatcatatccaattgttc 25517802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 21617044 - 21617093
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||||||    
T  21617044 tatggtcctgcacacttgaacaaatattagcatattcaattgatctttta 21617093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 1635014 - 1634959
Alignment:
Q  240 gaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttc 295  Q
    |||||||||| |||| || ||||||||||||||||||||||| ||| |||||||||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttc 1634959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 9557986 - 9557931
Alignment:
Q  244 ttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||||||||   |||||||||| |||||||| |||||||||||||||||||||    
T  9557986 ttaattatatggtcc--cacacttgaatacatattaacatattcaattgttcttttat 9557931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 12398137 - 12398179
Alignment:
Q  255 gtcatgcacacttgaacacatattagcatattcaattgttctt 297  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  12398137 gtcatgcacacttgaacatatattagcatattcaattattctt 12398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 1090228 - 1090187
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  1090228 tatggtcatgcacacttgaacaaatattagcatatccaattg 1090187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 33256039 - 33255998
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  33256039 tatggtcatgcacacttgaacaaatattagcatatccaattg 33255998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 33276211 - 33276170
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  33276211 tatggtcatgcacacttgaacaaatattagcatatccaattg 33276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 1812525 - 1812482
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||    
T  1812525 tatggtcatgcacacttaaacatatattagcatattcgattgtt 1812482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 22669132 - 22669093
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattag 280  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  22669132 aatttaattatatggtcctgcacacttgaacaaatattag 22669093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 9659071 - 9659109
Alignment:
Q  254 ggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  9659071 ggtcatgcacacttgaacaaatattagcatatccaattg 9659109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 26701833 - 26701791
Alignment:
Q  250 atatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  26701833 atatggtcctgcacacttgaacaaatattagcatatccaattg 26701791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 10757797 - 10757838
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  10757797 tatggtcatgtacactttaacaaatattagcatattcaattg 10757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 16478453 - 16478412
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  16478453 tatggtcttgcacacttgaacaaatattagcatatccaattg 16478412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 19018836 - 19018795
Alignment:
Q  256 tcatgcacacttgaacacatattagcatattcaattgttctt 297  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  19018836 tcatgcacacttgaacaaatattagtatattcaattgctctt 19018795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 19227814 - 19227863
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    ||||||| |||||||||||||| ||||||  ||||| |||||||||||||    
T  19227814 tatggtcctgcacacttgaacatatattaatatatttaattgttctttta 19227863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 38282976 - 38283017
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  38282976 tatggtcatgtacacttgaacaaatattagcatatccaattg 38283017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 48704593 - 48704634
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  48704593 tatggtcatgtacacttgaacaaatattagcatatccaattg 48704634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 34523909 - 34523845
Alignment:
Q  235 aattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttt 299  Q
    |||| ||||||||||  |||||| | |||||||||||| ||||||| ||||  ||||||||||||    
T  34523909 aattcgaatttaattccatggtccttcacacttgaacatatattagtatatctaattgttctttt 34523845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 22731762 - 22731904
Alignment:
Q  160 aagcttctcttttgcttcagatgc-ttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcga-tctaagaattagaatttaattatatggtc 257  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||| |||||||| ||| |||||| || ||||||||  | |||||| |||||||||     
T  22731762 aagcttctcttttgcttcagatgctttcttta-acgttcagagtctttatgtttcagaactaaaacttgactctaagaagcataatttagttatatggtt 22731860  T
Q  258 atgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
     |||| ||||||||||| |||| || || ||||| |||||||||    
T  22731861 ctgcatacttgaacacacattatcacatccaattcttcttttat 22731904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 23183450 - 23183489
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattag 280  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  23183450 aatttaattatatggtcatgcacacttgaacacacattag 23183489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 5740776 - 5740846
Alignment:
Q  231 taagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||| ||||||||||||| ||  ||| | |||| ||||||||| |||||||||| |||||||||||||||    
T  5740776 taagagttagaatttaattttaatgtcctacacatttgaacacacattagcatatccaattgttcttttat 5740846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 2913389 - 2913348
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  2913389 tatggtcatgtacacttgaacaaatattagcatattcaattg 2913348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 15304940 - 15304981
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  15304940 tatggtcatgcacacttgaacaaatattagcatatccaattg 15304981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 9396688 - 9396648
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  9396688 tatggtcatgcacacttgaacaaatattagcatatccaatt 9396648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 15756999 - 15756951
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattc-aattgttcttt 298  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||    
T  15756999 tatggtcatgcacacttgaatatatattagcatattcaaattgttcttt 15756951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 7144677 - 7144618
Alignment:
Q  239 agaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||||||||||  |||| ||||||||||| |||  ||||| ||||||||||||    
T  7144677 agaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttcttt 7144618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 13880984 - 13881027
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  13880984 tatatggtcctgcacacttgaacaaatattagcatatccaattg 13881027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 1878031 - 1877990
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  1878031 tatggtcctgcacacttgaacaaatattagcatatccaattg 1877990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 4550030 - 4550071
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  4550030 tatggtcatgcacacttaaacaaatattagcatattcgattg 4550071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 9069963 - 9070004
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  9069963 tatggtcctgtacacttgaacaaatattagcatattcaattg 9070004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 10646558 - 10646505
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    ||||| ||||||||||| |||||||||||||| || ||| ||||| ||||||||    
T  10646558 aattttattatatggtcctgcacacttgaacatatgttaacatatccaattgtt 10646505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 12366518 - 12366477
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  12366518 tatggtcctgtacacttgaacaaatattagcatattcaattg 12366477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 14304151 - 14304110
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||| ||||||||||||    
T  14304151 tatggtcctgcacacttgaacaaatattatcatattcaattg 14304110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 16412418 - 16412451
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  16412418 tgcacacttgaacaaatattagcatattcaattg 16412451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 22577788 - 22577747
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  22577788 tatggtcatgtacacttgaacaaatattagcatatccaattg 22577747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 12222242 - 12222202
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    |||||||||||||||||||||| ||| |||||||| |||||    
T  12222242 tatggtcatgcacacttgaacaaatactagcatatccaatt 12222202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 19650700 - 19650736
Alignment:
Q  237 ttagaatttaattatatggtcatgcacacttgaacac 273  Q
    |||||||| |||||||||||||| |||||||||||||    
T  19650700 ttagaattcaattatatggtcatacacacttgaacac 19650736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 22186347 - 22186439
Alignment:
Q  202 tcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    |||| ||| |||| ||| |||||| ||| ||||||||||||||||||| ||| ||| |||| |||| |||||| |||||||||||||||||||    
T  22186347 tcttgatgcttcagaaccaaaacttgatttaagaattagaatttaattttatagtcctgcatacttaaacacacattagcatattcaattgtt 22186439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 18807379 - 18807510
Alignment:
Q  162 gcttctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgc 261  Q
    ||||||||||||||||||||| || | ||||  |||  || ||| |||||  ||||| | |||| ||  ||||| ||||||||||||| |||| || | |    
T  18807379 gcttctcttttgcttcagatg-ttatctatgtcttcgtagccttgatgttagaaaaccataacttgacttaagagttagaatttaattttatgatccttc 18807477  T
Q  262 acacttgaacacatattagcatattcaattgtt 294  Q
    |||||||||||||  ||||||||| ||||||||    
T  18807478 acacttgaacacaccttagcatatccaattgtt 18807510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 642459 - 642416
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  642459 tatatggtcctgcacacttgaacaaatattagcatatccaattg 642416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 9398510 - 9398467
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  9398510 tatatggtcttgcacacttgaacaaatattagcatatccaattg 9398467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 21099456 - 21099413
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||    
T  21099456 tatatggtcatgcacacttcaacaaatattagcatatccaattg 21099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 22254385 - 22254475
Alignment:
Q  210 tttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    |||| |||| |||||| ||| ||| |||| |||||||||| ||||  | |||||||| ||||||||||||  |||||||||||||| |||||    
T  22254385 tttctaaaccaaaacttgatttaacaatt-gaatttaattctatgaacttgcacactcgaacacatattattatattcaattgttcgtttat 22254475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 18821097 - 18821139
Alignment:
Q  256 tcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||||||||||||||||| ||||  |||||||||||    
T  18821097 tcatgcacacttgaacacatattagtatataaaattgttcttt 18821139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 17815357 - 17815398
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  17815357 tatggtcttgtacacttgaacaaatattagcatattcaattg 17815398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 16607911 - 16607955
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttc 295  Q
    ||||||| |||||||||||||| |||||||| ||| |||||||||    
T  16607911 tatggtcttgcacacttgaacaaatattagcgtatccaattgttc 16607955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 25096568 - 25096528
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    ||||||| |||||| ||||||| ||||||||||||||||||    
T  25096568 tatggtcctgcacatttgaacaaatattagcatattcaatt 25096528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 25154538 - 25154498
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    ||||||| |||||| ||||||| ||||||||||||||||||    
T  25154538 tatggtcctgcacatttgaacaaatattagcatattcaatt 25154498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 22881678 - 22881758
Alignment:
Q  218 caaaaactcgatctaagaattagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    |||||||| || |||| | ||||||||||||||||||||||| |||||| ||||||| |||||  ||| ||||||||||||    
T  22881678 caaaaacttgacctaatagttagaatttaattatatggtcatacacactagaacacacattagagtatccaattgttcttt 22881758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 12843492 - 12843551
Alignment:
Q  239 agaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| ||||||    
T  12843492 agaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattcttt 12843551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 23584650 - 23584604
Alignment:
Q  252 atggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||    
T  23584650 atggtcctgcgcacttgaacatatattagcatattcaattgttcttt 23584604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 24122156 - 24122201
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgttct 296  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  24122156 tatggtcctgcacacttgaacacatattagcatatccaattattct 24122201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 17872093 - 17872033
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||| |||| || |||| ||||||||||| ||||||||||  ||||||||||||||    
T  17872093 aatttaattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttat 17872033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 18773017 - 18773059
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    ||||||||| |||||||||||||| |||||||||||| |||||    
T  18773017 tatatggtcctgcacacttgaacaaatattagcatatccaatt 18773059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 12863774 - 12863819
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  12863774 tatatggtcctgcacacttaaacacatattaacatatccaattgtt 12863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 17916595 - 17916554
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| ||||||| |||||||||||| ||||||    
T  17916595 tatggtcatgcacatttgaacaaatattagcatatgcaattg 17916554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 19342274 - 19342213
Alignment:
Q  237 ttagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||||| ||||||  |||||||||||||||| ||| |  ||| ||||||||||||    
T  19342274 ttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttcttt 19342213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 22461389 - 22461348
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  22461389 tatggtcctgcacacttgaacaaatattagcatatccaattg 22461348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 23192367 - 23192326
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  23192367 tatggtcctgcacacttgaacaaatattagcatatccaattg 23192326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 23352852 - 23352811
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||| ||||||||| |||||||||||| ||||||    
T  23352852 tatggtcatgcatacttgaacaaatattagcatatccaattg 23352811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 26833442 - 26833483
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  26833442 tatggtcctgcacacttgaacaaatattagcatatccaattg 26833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 26576966 - 26577010
Alignment:
Q  254 ggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    |||| |||||||||||| | ||||||||||||| |||||||||||    
T  26576966 ggtcctgcacacttgaatatatattagcatattaaattgttcttt 26577010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 29092679 - 29092622
Alignment:
Q  240 gaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||    |||||||||||||||    
T  29092679 gaatttaattttatgatcatgcatacttgaacacacattagca----caattgttcttttat 29092622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 14315319 - 14315276
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  14315319 tatggtcatgcaaacttgaacacatattagcatattcaattgtt 14315276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 3680869 - 3680910
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  3680869 tatggtcatgtacacttgaacaaatattagcatattcaattg 3680910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 30701200 - 30701139
Alignment:
Q  240 gaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    |||||||||| || |||| || | ||||||| |||||||||||||| |||||||||||||||    
T  30701200 gaatttaattgtacggtcctgaagacttgaatacatattagcatatccaattgttcttttat 30701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 1559376 - 1559424
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattc-aattgttcttt 298  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||    
T  1559376 tatggtcatgcacacttgaatatatattagcatattcaaattgttcttt 1559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 23600784 - 23600724
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||| ||| ||| || ||||||||||||| ||||| |||| |||||||||||||||    
T  23600784 aatttaattctatagtcctgtacacttgaacacacattagtatatgcaattgttcttttat 23600724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 15987586 - 15987629
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  15987586 tatatggtcctgcacacttgaacaaatattagcatatccaattg 15987629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 4312758 - 4312803
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||||    
T  4312758 tatatggtcatgcacacttgaacatgtattagaatatccaattgtt 4312803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 15477583 - 15477550
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  15477583 tgcacacttgaacaaatattagcatattcaattg 15477550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 17928197 - 17928238
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  17928197 tatggtcatgtacacttgaacaaatattagcatatccaattg 17928238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 26186072 - 26186113
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  26186072 tatggtcctgcacacttgaacaaatattagcatatccaattg 26186113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 24399045 - 24399085
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaatt 291  Q
    ||||||| |||||||||||||| |||||||||||| |||||    
T  24399045 tatggtcctgcacacttgaacaaatattagcatatccaatt 24399085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 14117125 - 14117183
Alignment:
Q  237 ttagaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttc 295  Q
    ||||||||||||| || ||||||||||||| ||||||||||||| |||| |||||||||    
T  14117125 ttagaatttaattctacggtcatgcacactcgaacacatattagtatatccaattgttc 14117183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 17526203 - 17526160
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  17526203 tatatggtcttgcacacttgaacacatattagcatatccaattg 17526160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 4046257 - 4046211
Alignment:
Q  250 atatggtcatgcacacttgaacacatattagcatattcaattgttct 296  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||    
T  4046257 atattgtcatgcacacttgaacgcacattagcatattcaattgttct 4046211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 8863866 - 8863928
Alignment:
Q  239 agaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttttat 301  Q
    ||||||||||||||||||  |||| | ||||| ||| |||||||||| |||||||||||||||    
T  8863866 agaatttaattatatggttctgcatatttgaatacacattagcatatccaattgttcttttat 8863928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 11442778 - 11442835
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||| | ||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  11442778 aatttaattctttggtcatacacactcgaacacacattaacatattcaattgttcttt 11442835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 11550917 - 11550860
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||| | ||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  11550917 aatttaattctttggtcatacacactcgaacacacattaacatattcaattgttcttt 11550860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 12380542 - 12380591
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||||||||||| |||| ||||||| |||| ||||||||||||    
T  12380542 tatatggtcatgcacacttaaacatatattagaatatccaattgttcttt 12380591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 17787754 - 17787714
Alignment:
Q  252 atggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  17787754 atggtcctgcacacttgaacagatattagcatattcaattg 17787714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 6642072 - 6642115
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||    
T  6642072 tatatggtcatgtacacttgaacaaatattagcatatccaattg 6642115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 23088013 - 23088056
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||    
T  23088013 tatatggtcctgcacacttgaacaaatattaacatattcaattg 23088056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 2652128 - 2652169
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  2652128 tatggtcgtgcacacttgaacaaatattagcatatccaattg 2652169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 9883111 - 9883054
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||| ||||||  ||||||||| |||||| |||||  ||||||||||||||||    
T  9883111 aatttaattttatggtagtgcacacttaaacacaaattagagtattcaattgttcttt 9883054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 14356883 - 14356842
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  14356883 tatggtcctacacacttgaacaaatattagcatattcaattg 14356842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 14833784 - 14833821
Alignment:
Q  255 gtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  14833784 gtcatgtacacttgaacaaatattagcatattcaattg 14833821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 14902210 - 14902169
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  14902210 tatggtcctgcacacttgaacaaatattagcatatccaattg 14902169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 19809969 - 19809928
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    |||||||||||||| ||||||| ||||||||||| |||||||    
T  19809969 tgcacacttgaacaaatattagtatattcaattgatctttta 19809928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 19818961 - 19818920
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattgttctttta 300  Q
    |||||||||||||| |||||||||||| |||||| |||||||    
T  19818961 tgcacacttgaacaaatattagcatatccaattgatctttta 19818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 19888858 - 19888817
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  19888858 tatggtcctgcacacttgaacaaatattagcatatccaattg 19888817  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 19911664 - 19911623
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  19911664 tatggtcatgtacacttgaacaaatattagcatatccaattg 19911623  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 27941205 - 27941262
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttcttt 298  Q
    |||||||||||||||||   ||||| |||||| |||||||||||| | ||||||||||    
T  27941205 aatttaattatatggtcccacacacgtgaacatatattagcatatccgattgttcttt 27941262  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 45833783 - 45833824
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  45833783 tatggtcatgtacacttgaacaaatattagcatatccaattg 45833824  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 54680292 - 54680325
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  54680292 tgcacacttgaacaaatattagcatattcaattg 54680325  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 11449179 - 11449131
Alignment:
Q  249 tatatggtcatgcacacttgaacacatattagcatattcaattgttctt 297  Q
    ||||||||| |||||||||||||| |||||| ||| | |||||||||||    
T  11449179 tatatggtcctgcacacttgaacatatattaacatgtccaattgttctt 11449131  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 47576018 - 47576054
Alignment:
Q  262 acacttgaacacatattagcatattcaattgttcttt 298  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  47576018 acacttgaacatatattagcatattcaagtgttcttt 47576054  T

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Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 6525 - 6402
Alignment:
Q  166 ctcttttgcttcagatgcttctttatgcgttcagagtcttaatgtttcaaaacaaaaactcgatctaagaattagaatttaattatatggtcatgcacac 265  Q
    ||||| ||||| |||||||   |||||| |||| | ||||||||||||| ||  |||||  ||  ||||||||| ||| || || || ||||||||||||    
T  6525 ctcttctgctttagatgctatcttatgcattcataatcttaatgtttcagaatcaaaacatgacttaagaattaaaatctagttttacggtcatgcacac 6426  T
Q  266 ttgaacacatattagcatattcaa 289  Q
    ||||||||| |||| |||||||||    
T  6425 ttgaacacacattaacatattcaa 6402  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 139505 - 139562
Alignment:
Q  241 aatttaattatatggtcatgcacacttgaacacatattagcatattcaattgttctttt 299  Q
    ||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| ||||    
T  139505 aatttaattctatagtcatgaaca-ttgaacacatattagcatattcaattgttgtttt 139562  T

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Target: scaffold0364 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 10132 - 10097
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatatt 286  Q
    |||||||||||||||||||||| |||||||||||||    
T  10132 tatggtcatgcacacttgaacaaatattagcatatt 10097  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 4660 - 4714
Alignment:
Q  240 gaatttaattatatggtcatgcacacttgaacacatattagcatattcaattgtt 294  Q
    |||||| | ||||||||| |||||||||||| | |||||||||||| ||||||||    
T  4660 gaattttagtatatggtcctgcacacttgaaaatatattagcatatccaattgtt 4714  T

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Target: scaffold0758 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 4638 - 4679
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  4638 tatggtcctgcacacttgaacaaatattagcatatccaattg 4679  T

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Target: scaffold0522 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 3973 - 3940
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  3973 tgcacacttgaacaaatattagcatattcaattg 3940  T

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Target: scaffold0522; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 11263 - 11223
Alignment:
Q  252 atggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| |||||||||||||| |||||||||||| ||||||    
T  11263 atggtcctgcacacttgaacaaatattagcatatccaattg 11223  T

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Target: scaffold0488 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 11321 - 11280
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  11321 tatggtcatgtacacttgaacaaatattagcatatccaattg 11280  T

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Target: scaffold0337 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 15055 - 15096
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||| ||||||||||    
T  15055 tatggtcatgtacacttgaacaaatattagcgtattcaattg 15096  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 10187 - 10228
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  10187 tatggtcatgtacacttgaacaaatattagcatatccaattg 10228  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 35894 - 35853
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  35894 tatggtcctgcacacttgaacaaatattagcatatccaattg 35853  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 30618 - 30655
Alignment:
Q  255 gtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  30618 gtcatgtacacttgaacaaatattagcatattcaattg 30655  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 159466 - 159507
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  159466 tatggtcctgcacacttgaacaaatattagcatatccaattg 159507  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 145263 - 145304
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  145263 tatggtcctgcacacttgaacaaatattagcatatccaattg 145304  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 52899 - 52940
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  52899 tatggtcatgtacacttgaacaaatattagcatatccaattg 52940  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 56851 - 56892
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  56851 tatggtcatgtacacttgaacaaatattagcatatccaattg 56892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 5915 - 5878
Alignment:
Q  255 gtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  5915 gtcatgtacacttgaacaaatattagcatattcaattg 5878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 1130 - 1163
Alignment:
Q  259 tgcacacttgaacacatattagcatattcaattg 292  Q
    |||||||||||||| |||||||||||||||||||    
T  1130 tgcacacttgaacaaatattagcatattcaattg 1163  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 116182 - 116223
Alignment:
Q  251 tatggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  116182 tatggtcctgcacacttgaacaaatattagcatatccaattg 116223  T

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Target: scaffold1782 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 736 - 776
Alignment:
Q  252 atggtcatgcacacttgaacacatattagcatattcaattg 292  Q
    |||||| |||||||||||||| |||||||||||| ||||||    
T  736 atggtcctgcacacttgaacaaatattagcatatccaattg 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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