View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_4 (Length: 627)
Name: NF11396_high_4
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 8342231 - 8342845
Alignment:
| Q |
1 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagag--tgaattggcga |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
8342231 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagagagtgaattggtga |
8342330 |
T |
|
| Q |
99 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcaca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
8342331 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctgatatgattggcctcggagtggcatgcctccaaaacgacaggagacggcaca |
8342430 |
T |
|
| Q |
197 |
tccaccaccgttggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaaactaggccttttggaaacgttccatttatg |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
8342431 |
tccaccaccattggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaagctaggccatttggaaacgttccatttatg |
8342530 |
T |
|
| Q |
297 |
agtcgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctctgttgcaaattaacttggagattttctattgtgtgatataattgttat |
396 |
Q |
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| T |
8342531 |
agtcgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctctgttgcaaattaacttggagattttctattgtgtgatattattgttat |
8342630 |
T |
|
| Q |
397 |
tgcaactaaagctttgtttatttgggacatcagtgttcacttttatggatcatcatcacctaaactgatttgtccatgaagcatctgtctttctattata |
496 |
Q |
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| T |
8342631 |
tgcaactaaagctttgtttatttgggacatcagtgttcacttttatggatcatcatcacctaaactgatttgtccatgaagcatctgtctttctattata |
8342730 |
T |
|
| Q |
497 |
aactgatttgtattaatataagttacatctgttcgagtttcagagaaaactttccctcttgaagtactcagatcaagttttctctgatgatttggcttta |
596 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342731 |
aactgatttgtattaatgtaagttacatctgttcgagtttcagagaaaactttccctcttgaagtactcagatcaagttttctctgatgatttggcttta |
8342830 |
T |
|
| Q |
597 |
ctacaaagaggatat |
611 |
Q |
| |
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||||||||||||||| |
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| T |
8342831 |
ctacaaagaggatat |
8342845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3228318 - 3228110
Alignment:
| Q |
1 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcga |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
3228318 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgccagttacatctgggaacctcttcgatttatagagagtgaattggcga |
3228219 |
T |
|
| Q |
99 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcaca |
196 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| | ||||||||||| |||||||| ||||||| |
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| T |
3228218 |
ggtatcaattctattgaaaagtgaggtcggaagacaga-ggtgtttctgatatgattggcctcggagtggcatgcctccaaaatgacaggagtcggcaca |
3228120 |
T |
|
| Q |
197 |
tccaccaccg |
206 |
Q |
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|||||||||| |
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| T |
3228119 |
tccaccaccg |
3228110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 457
Target Start/End: Complemental strand, 8365991 - 8365879
Alignment:
| Q |
349 |
tgttgcaaattaacttggagattttctattgtgtgatataattgttattgcaactaaagctttgtttatttgggac----atcagtgttcacttttatgg |
444 |
Q |
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|||||||||||||||||| |||||||||| | |||||| ||||| | ||||||||||||||||| || ||||| || |||||||||||| |||| |
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| T |
8365991 |
tgttgcaaattaacttggtaattttctattttttgatattattgtcacaccaactaaagctttgttttttagggacattaattagtgttcactttgatgg |
8365892 |
T |
|
| Q |
445 |
atcatcatcacct |
457 |
Q |
| |
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||||| ||||||| |
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| T |
8365891 |
atcataatcacct |
8365879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 448
Target Start/End: Complemental strand, 29584731 - 29584639
Alignment:
| Q |
356 |
aattaacttggagattttctattgtgtgatataattgttattgcaactaaagctttgtttatttgggacatcagtgttcacttttatggatca |
448 |
Q |
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||||||||||| || || || |||||||||| ||| | |||| ||||||||||||||| ||||||||||| |||||||| || |||||||| |
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| T |
29584731 |
aattaacttggtgagttattactgtgtgatattattatcattgaaactaaagctttgttaatttgggacattagtgttcatgttgatggatca |
29584639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 457
Target Start/End: Original strand, 4442771 - 4442861
Alignment:
| Q |
370 |
ttttctattgtgtgatataattgttattgcaactaaagctttgtttatttgggacat----cagtgttcacttttatggatcatcatcacct |
457 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||||||| ||||||| | ||||||| |
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| T |
4442771 |
ttttctaatgtgtgatattattgtcattgcaactaaagctttgttt-tttgtgacattaactagtgttcactttgatggatcttaatcacct |
4442861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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