View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_high_44 (Length: 238)

Name: NF11396_high_44
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_high_44
NF11396_high_44
[»] chr3 (5 HSPs)
chr3 (86-221)||(53221762-53221897)
chr3 (16-95)||(21410135-21410214)
chr3 (1-54)||(4276395-4276448)
chr3 (36-212)||(33974944-33975120)
chr3 (162-221)||(14629307-14629367)
[»] chr4 (4 HSPs)
chr4 (1-113)||(42115772-42115884)
chr4 (16-110)||(2508524-2508617)
chr4 (28-214)||(44916159-44916346)
chr4 (16-61)||(19681440-19681485)
[»] chr6 (1 HSPs)
chr6 (1-106)||(10407453-10407557)
[»] chr2 (3 HSPs)
chr2 (1-110)||(42117026-42117135)
chr2 (157-198)||(5117047-5117089)
chr2 (158-221)||(39376255-39376318)
[»] scaffold0374 (1 HSPs)
scaffold0374 (1-113)||(16420-16532)
[»] chr1 (2 HSPs)
chr1 (16-94)||(2965757-2965835)
chr1 (28-135)||(2965607-2965714)
[»] chr8 (4 HSPs)
chr8 (1-113)||(34686610-34686722)
chr8 (1-54)||(8714104-8714157)
chr8 (1-58)||(35434097-35434154)
chr8 (10-113)||(13771557-13771660)
[»] chr5 (2 HSPs)
chr5 (1-113)||(35890966-35891078)
chr5 (1-54)||(32459667-32459720)
[»] chr7 (5 HSPs)
chr7 (6-54)||(5559445-5559493)
chr7 (1-54)||(27995390-27995443)
chr7 (162-214)||(28256919-28256972)
chr7 (162-214)||(42990991-42991043)
chr7 (162-198)||(1286778-1286814)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 53221897 - 53221762
Alignment:
Q  86 gtatcgttttaatctaagtcaacaacttgacgcgcaaatcaacaccagttcaactgagattaatattaggagtgatggtgaaataatttatcaactaaaa 185  Q
    |||||||||| |||||||||| ||| |||||| ||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||    
T  53221897 gtatcgttttgatctaagtcagcaatttgacgtgcaaatcaacaccagttcaacggagactaatatcaggagtgacggtgaaataatttatcaactaaaa 53221798  T
Q  186 aacctatttaaaatttgaaggattaacttaggaatt 221  Q
    || ||||||||||||||||| |||||||||||||||    
T  53221797 aaactatttaaaatttgaagaattaacttaggaatt 53221762  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 21410135 - 21410214
Alignment:
Q  16 tttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgtttt 95  Q
    ||||||||||| ||| |||| |||||||||||||||||||| |||| | ||  ||||||||||||||||| |||||||||    
T  21410135 tttctagccctataactgatcatttgtgaccattaaacgcagcgttttgacaccctgaagcctttgaaacatatcgtttt 21410214  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4276448 - 4276395
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacg 54  Q
    |||| ||||||||  |||||||| || |||||||||||||||||||||||||||    
T  4276448 ttgtaaatagctgtctttctagcactataaatgattatttgtgaccattaaacg 4276395  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 33974944 - 33975120
Alignment:
Q  36 tatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatctaagtcaacaacttgacgcgcaaatcaacaccagtt 135  Q
    ||||||||| |||||||| || | || | ||  ||| |||||||||||||| |||||||||||  ||| || |||||| |||  || ||||||| |||||    
T  33974944 tatttgtgatcattaaactcagcattttgacaccctaaagcctttgaaacgcatcgttttaattcaag-cagcaacttaacggccacatcaacatcagtt 33975042  T
Q  136 caactgagattaatattaggagtgatggtgaaataatttatcaactaaaa-aacctatttaaaatttgaaggattaac 212  Q
     ||  |||| | | | ||||  | |||||||||||||||||||||||||| ||||||||| ||| || ||||| ||||    
T  33975043 aaatggagactgacaatagggataatggtgaaataatttatcaactaaaagaacctatttgaaacttaaaggactaac 33975120  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 14629367 - 14629307
Alignment:
Q  162 ggtgaaataatttatcaactaaaa-aacctatttaaaatttgaaggattaacttaggaatt 221  Q
    |||||||||||||||||||||||| ||||||||| ||| || ||||| |||||| ||||||    
T  14629367 ggtgaaataatttatcaactaaaagaacctatttgaaacttaaaggactaacttgggaatt 14629307  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42115884 - 42115772
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    |||||||||| |||||||||||| || |||||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||| |||     
T  42115884 ttgtcaatagttgcttttctagctctataaatgatcatttgtgaccattaaacgcaacattctgactacctggagcctttgaaacgcatcgttttgatcc 42115785  T
Q  101 aagtcaacaactt 113  Q
    |||||| ||||||    
T  42115784 aagtcagcaactt 42115772  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 2508524 - 2508617
Alignment:
Q  16 tttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatctaagtcaacaa 110  Q
    ||||||| ||| |||||||| | ||||||||||||||||||||||||| ||||||||  | | |||||||  |||||||| ||||||||||||||    
T  2508524 tttctagtcctataaatgatcacttgtgaccattaaacgcaacgttctgactacctg-ggtcattgaaacacatcgttttgatctaagtcaacaa 2508617  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 44916159 - 44916346
Alignment:
Q  28 taaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatctaagtcaacaacttgacgcgcaaatcaa 127  Q
    ||||||||  ||| ||||||||||| |||  ||| | |||||||  ||||||||||||| ||| |||  ||| ||||||||||||| |||  || |||||    
T  44916159 taaatgatgttttatgaccattaaatgcagtgttttgactacctagagcctttgaaacgcatcatttcgatcaaagtcaacaacttaacggccacatcaa 44916258  T
Q  128 caccagttcaactgagattaatattaggagtgatggtgaaataatttatcaactaaaa-aacctatttaaaatttgaaggattaactt 214  Q
    || ||||| ||| |||| |   | |||| || |  |||||||| |||||||||||||| ||||||||| ||| || ||||| ||||||    
T  44916259 catcagttaaacggagactggcagtaggggtaacagtgaaatagtttatcaactaaaataacctatttgaaacttaaaggactaactt 44916346  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 19681485 - 19681440
Alignment:
Q  16 tttctagccctttaaatgattatttgtgaccattaaacgcaacgtt 61  Q
    |||||||| || |||||||| |||||||||||||||||| ||||||    
T  19681485 tttctagcactataaatgatcatttgtgaccattaaacgtaacgtt 19681440  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10407557 - 10407453
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    ||||||||| |||| ||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||| | |||||||| |||     
T  10407557 ttgtcaataactgcctttttagccctataaatgaatatttgtgaccattaaacgcaacgttctgactacctcgagcctttgaaa-gcatcgttttgatcc 10407459  T
Q  101 aagtca 106  Q
    ||||||    
T  10407458 aagtca 10407453  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42117026 - 42117135
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| || | | ||| ||  |||||||||||  |||||||| |||     
T  42117026 ttgtcaatagctgcctttctagccctataaatgattatttgtgatcattaaatgcaacattttgattacttggggcctttgaaactcatcgttttgatcc 42117125  T
Q  101 aagtcaacaa 110  Q
    ||||||||||    
T  42117126 aagtcaacaa 42117135  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 5117047 - 5117089
Alignment:
Q  157 gtgatggtgaaataatttatcaactaaaaa-acctatttaaaa 198  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  5117047 gtgatggtgaaataatttatcaactaaaaagacatatttaaaa 5117089  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 39376318 - 39376255
Alignment:
Q  158 tgatggtgaaataatttatcaactaaaaa-acctatttaaaatttgaaggattaacttaggaatt 221  Q
    ||||||||||||| ||||||||||||||| || ||||| |||||| || || |||||||||||||    
T  39376318 tgatggtgaaatagtttatcaactaaaaagacttatttgaaattt-aaagactaacttaggaatt 39376255  T

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Target: scaffold0374 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16420 - 16532
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||| ||||||  ||||||| | |||||||| ||||||||||||  |||||||| |||     
T  16420 ttgtcaatagctgcctttctagccttataaatgatcatttgtgactattaaaaacaacgttatgactacctggagcctttgaaactcatcgttttgatcc 16519  T
Q  101 aagtcaacaactt 113  Q
     ||||| ||||||    
T  16520 tagtcagcaactt 16532  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2965757 - 2965835
Alignment:
Q  16 tttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttt 94  Q
    ||||||||||| |||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||  |||||||    
T  2965757 tttctagccctataaatgatcatttgtgaccattaaacacatcgttttgactacctgaagcctttgaaacacatcgttt 2965835  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 2965714 - 2965607
Alignment:
Q  28 taaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatctaagtcaacaacttgacgcgcaaatcaa 127  Q
    |||||||| |||||||||||||||||||| |||| | | |||||  ||||||  ||||| |||||||| ||||| || |||||||| | || || |||||    
T  2965714 taaatgatcatttgtgaccattaaacgcagcgttttgattacctagagccttataaacgcatcgttttgatctatgttaacaacttaatgcccacatcaa 2965615  T
Q  128 caccagtt 135  Q
    || |||||    
T  2965614 catcagtt 2965607  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34686722 - 34686610
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    |||||||||| ||| |||||||| || |||||||| |||||||| |||||||||| || || | |||||||  ||||||||||||| || ||||| ||      
T  34686722 ttgtcaataggtgcctttctagctctgtaaatgatcatttgtgagcattaaacgcgacattttgactacctagagcctttgaaacgcattgttttgattc 34686623  T
Q  101 aagtcaacaactt 113  Q
    |||||| ||||||    
T  34686622 aagtcaccaactt 34686610  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8714157 - 8714104
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacg 54  Q
    |||| |||||||||||||||||| || |||||||| ||||||||||||||||||    
T  8714157 ttgtaaatagctgcttttctagcactataaatgatcatttgtgaccattaaacg 8714104  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35434154 - 35434097
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaac 58  Q
    ||||||||| |||| ||||||||||| |||||||| |||||||| |||||||||||||    
T  35434154 ttgtcaatatctgcctttctagccctataaatgatcatttgtgatcattaaacgcaac 35434097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 13771660 - 13771557
Alignment:
Q  10 gctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatctaagtcaaca 109  Q
    ||||| ||||||||||| ||| |||| ||||||||||||||| |||||| || | || ||||  ||||||||||||| ||| |||| ||  |||||| ||    
T  13771660 gctgcatttctagccctataattgatcatttgtgaccattaagcgcaacattttgaccacctagagcctttgaaacgcatcattttgattcaagtcagca 13771561  T
Q  110 actt 113  Q
    ||||    
T  13771560 actt 13771557  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35891078 - 35890966
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacgcaacgttctaactacctgaagcctttgaaacgtatcgttttaatct 100  Q
    |||||||||||| | |||||||| || ||||||||| |||||| |||| ||||| |||||| | ||| | |||||||||||||||  || ||||| ||      
T  35891078 ttgtcaatagctacatttctagcactataaatgattttttgtgcccatgaaacgtaacgttttgactgcttgaagcctttgaaacacattgttttgattc 35890979  T
Q  101 aagtcaacaactt 113  Q
    |||||||||||||    
T  35890978 aagtcaacaactt 35890966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32459667 - 32459720
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacg 54  Q
    |||||||||| ||| ||| ||||||| ||||||||  |||||||||||||||||    
T  32459667 ttgtcaatagttgcctttttagccctataaatgatcttttgtgaccattaaacg 32459720  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5559445 - 5559493
Alignment:
Q  6 aatagctgcttttctagccctttaaatgattatttgtgaccattaaacg 54  Q
    |||| |||| |||||||| || |||||||||||||||||||||||||||    
T  5559445 aatatctgcctttctagcactataaatgattatttgtgaccattaaacg 5559493  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27995390 - 27995443
Alignment:
Q  1 ttgtcaatagctgcttttctagccctttaaatgattatttgtgaccattaaacg 54  Q
    |||| ||||||||| |||||||| || |||||||| || |||||||||||||||    
T  27995390 ttgtaaatagctgcatttctagcactataaatgatcatatgtgaccattaaacg 27995443  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 28256919 - 28256972
Alignment:
Q  162 ggtgaaataatttatcaactaaaa-aacctatttaaaatttgaaggattaactt 214  Q
    |||||||||||||||||||||||| ||| ||||||||| || ||||| ||||||    
T  28256919 ggtgaaataatttatcaactaaaataacatatttaaaacttaaaggactaactt 28256972  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 42990991 - 42991043
Alignment:
Q  162 ggtgaaataatttatcaactaaaaa-acctatttaaaatttgaaggattaactt 214  Q
    ||||||||| ||||||||||||||| ||||||||||||||| || |||||||||    
T  42990991 ggtgaaatagtttatcaactaaaaagacctatttaaaattt-aaagattaactt 42991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 1286778 - 1286814
Alignment:
Q  162 ggtgaaataatttatcaactaaaaaacctatttaaaa 198  Q
    |||||||||||||||||||||||| || |||||||||    
T  1286778 ggtgaaataatttatcaactaaaagacatatttaaaa 1286814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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