View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_high_47 (Length: 229)

Name: NF11396_high_47
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_high_47
NF11396_high_47
[»] chr3 (19 HSPs)
chr3 (1-196)||(2758718-2758913)
chr3 (1-158)||(2748540-2748697)
chr3 (1-158)||(2768611-2768768)
chr3 (1-158)||(2789900-2790057)
chr3 (1-158)||(2839039-2839196)
chr3 (1-158)||(2856249-2856406)
chr3 (5-158)||(2818099-2818252)
chr3 (1-158)||(2806803-2806960)
chr3 (1-158)||(2796903-2797060)
chr3 (1-130)||(5412477-5412606)
chr3 (65-114)||(22104280-22104329)
chr3 (69-153)||(30990142-30990226)
chr3 (194-229)||(2758857-2758892)
chr3 (51-121)||(22621766-22621836)
chr3 (57-114)||(21945190-21945247)
chr3 (65-114)||(22178974-22179023)
chr3 (65-121)||(21936703-21936759)
chr3 (62-114)||(22631320-22631372)
chr3 (62-114)||(22636357-22636409)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-158)||(6591-6748)
[»] chr1 (1 HSPs)
chr1 (45-142)||(34975040-34975137)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2758913 - 2758718
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||  ||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758913 tgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 2758814  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgtttttaccttaagaagttggaacacttctcccaaggctgat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758813 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgtttttaccttaagaagttggaacacttctcccaaggctgat 2758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2748697 - 2748540
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| || |||||||| ||||||||||||||||||| |||||||||     
T  2748697 tgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctc 2748598  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||||||| | |||||| ||||||||| ||| |||||||||||||    
T  2748597 tcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgttt 2748540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2768768 - 2768611
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||| |||||||||     
T  2768768 tgcttctctcagctgcttcacccaagttcttattccatcgttggtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctc 2768669  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||    
T  2768668 tcaagttcatctttgatgtctgaaaaatctctgtgtacaccactcagcagatttgttt 2768611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2790057 - 2789900
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| || ||| ||||||||||||||||||||| |||||||||     
T  2790057 tgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgctc 2789958  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||    
T  2789957 tcaagttcatctttgatgtctaaaaaatctttgtgcacaccactcaggagatttgttt 2789900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2839039 - 2839196
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| | ||||| |     
T  2839039 tgcttctctcagctgcttcacccaagttcttattccatcgttgatgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatc 2839138  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||| ||| | |||||| ||||||||||||| |||||||||||||    
T  2839139 tcaagttcatctttgatatctgaaaaatctctgtgtacacctctcagaagatttgttt 2839196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2856249 - 2856406
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||| | ||||||||||||||||||| |||||||||     
T  2856249 tgcttctctcagctgcttcacccaagttcttattccatcattgatgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctc 2856348  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||||||| | |||||| ||||||||||||| | |||||||||||    
T  2856349 tcaagttcatctttgatgtctgaaaaatctctgtgtacacctctcaaaagatttgttt 2856406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 2818252 - 2818099
Alignment:
Q  5 tctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaa 104  Q
    |||||||  |||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |    
T  2818252 tctctcacttgcttcacccatgttcttattccatcattggcgtccgcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttcta 2818153  T
Q  105 gttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||| | |||||| ||||||||||||| ||||| |||||||    
T  2818152 gttcatctttgatgtctgaaaaatctctgtgtacacctctcagaagctttgttt 2818099  T

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Target: chr3; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2806960 - 2806803
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||| | ||||||||| ||||| ||||| |||||||| ||  ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||     
T  2806960 tgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctc 2806861  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    ||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||    
T  2806860 tcaagttcatctttgatgtctgaaaattctgtgtgtacaccttttagaagatttgttt 2806803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2797060 - 2796903
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||| | ||||||||| || ||| ||||||||||||||||||| | |||||||||     
T  2797060 tgcttctctcagatgcttcacccaagttcttattccatcattggtgtcggtttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgctc 2796961  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    |||||||||||| |||||||| | ||||||||||| ||||  || || ||||||||||    
T  2796960 tcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcagatttgttt 2796903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5412606 - 5412477
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||||||||  |||||||||||||||||||||||||| |||  ||| ||||||||||| |||||| | ||||||||||||||||||  ||||||| ||    
T  5412606 tgcttctctcatatgcttcacccatgttcttattccatcattggcgtccgcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatt 5412507  T
Q  101 tcaagttcatctttgatgtctaagaaatct 130  Q
    || |||||||||||||||||| | ||||||    
T  5412506 tctagttcatctttgatgtctgaaaaatct 5412477  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 22104329 - 22104280
Alignment:
Q  65 cttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt 114  Q
    |||||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  22104329 cttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt 22104280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 30990142 - 30990226
Alignment:
Q  69 tatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatt 153  Q
    |||| |||||||| || |||  |||||||||||||||||||||||| || ||| | || || ||||| ||||||||||| |||||    
T  30990142 tatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaattccttgtgaacacctcttagcagatt 30990226  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 2758857 - 2758892
Alignment:
Q  194 gatgaagaagaaaccaatgaaggaataagaacatgg 229  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2758857 gatgaagcagaaaccaatgaaggaataagaacatgg 2758892  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 22621766 - 22621836
Alignment:
Q  51 cttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtct 121  Q
    ||||| |||| || |||||||| ||||| || ||||||  ||| |||||||||||||||||||| ||||||    
T  22621766 cttcacctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtct 22621836  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 21945247 - 21945190
Alignment:
Q  57 ctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt 114  Q
    ||||||| ||| |||| ||||| ||||||||   ||||||||||||||||||||||||    
T  21945247 ctgctgctcttttatcagcatccttgaggaatgcttgaatgctttcaagttcatcttt 21945190  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 22179023 - 22178974
Alignment:
Q  65 cttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt 114  Q
    |||||||| |||||||||||||||  ||| |||||||||| |||||||||    
T  22179023 cttctatcagcatctttgaggaaggcttggatgctttcaaattcatcttt 22178974  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 21936759 - 21936703
Alignment:
Q  65 cttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtct 121  Q
    |||||||| ||||| || ||||||  ||| |||||||||||||||||||| ||||||    
T  21936759 cttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtct 21936703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 22631320 - 22631372
Alignment:
Q  62 gcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt 114  Q
    ||||||||||| ||||| |||| ||||| || ||| |||||||||||||||||    
T  22631320 gcccttctatccgcatcgttgatgaagacttcaattctttcaagttcatcttt 22631372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 22636357 - 22636409
Alignment:
Q  62 gcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt 114  Q
    ||||||||||| ||||| |||| ||||| || ||| |||||||||||||||||    
T  22636357 gcccttctatccgcatcgttgatgaagacttcaattctttcaagttcatcttt 22636409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 6591 - 6748
Alignment:
Q  1 tgcttctctcagctgcttcacccatgttcttattccatcgttgatgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctt 100  Q
    |||||| ||||  ||||||||||| |||||||||||||| ||  |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  6591 tgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctt 6690  T
Q  101 tcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 158  Q
    |||||||||||||||||||||   |||||| ||||||||||||| |||||||||||||    
T  6691 tcaagttcatctttgatgtctgtaaaatctgtgtgtacacctctcagaagatttgttt 6748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 34975137 - 34975040
Alignment:
Q  45 tgtctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacct 142  Q
    ||||| ||||| |||| || |||||||| | |||||||||||||  |||||||||||| ||||||| ||| ||||||   || |||||||| ||||||    
T  34975137 tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacacct 34975040  T

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