View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11396_high_5 (Length: 597)
Name: NF11396_high_5
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Complemental strand, 1821554 - 1820980
Alignment:
| Q |
16 |
acttattatatttactagtggttaactttggagttgtctttatataatggtatagatatacattaagggactaagttggagagagtgatactttaaatta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1821554 |
acttattatatttactagtggttaactttggagttgtctttatataatggtatagatatacattaagggactaagttggagagagtgatactttaaatta |
1821455 |
T |
|
| Q |
116 |
taaat----atattattcaaataagaatatgataagaaaaaagagtatgagcagtcacacaaattgggaaggaagtaaatagataatttactacaac--- |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1821454 |
taaatgattatattattcaaataagaatatgataagaaaaaagagtatgagcagtcacacaaattgggaaggaagtaaatagataatttatcacaatgtg |
1821355 |
T |
|
| Q |
209 |
----------------atcatttttgggttaaatagacagtcattctgtcaagtatacatctcagaagtactcaacttcagtcaaccaagattacactag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1821354 |
gttgctcgtgaacagaatcatttttgggttaaatagacagtcattctgtcaagtatacatttcagaagtactcaacttcagtcaaccaagattacacaag |
1821255 |
T |
|
| Q |
293 |
aaacggaaatatagaacaaaacaatctgtacagacaatcaggttaatgatttaatccacaccatcttcaattttgttttcctttctttgccttcagtctt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1821254 |
aaacggaaatatagaacaaaacaatctgtacacacaatcaggttaatgatttaatccacaccatcttcaatttt----------ctttgccttcagtctt |
1821165 |
T |
|
| Q |
393 |
ccatcatattcacatcagaaaagttgtctttgcattccaacttttgaaggatcaacctttcttgctttgcatctgttgtactgtgtagtaaagaaactta |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1821164 |
ccatcatattcacatcagaaaagttgtctttgcattccaacttttgaaggatcaacctttcttgctttgcatctgttgtactgtgtagtaaagaaactta |
1821065 |
T |
|
| Q |
493 |
tcgaagcaaatcaaaatgttgtagtaagtgcaaaatgaatggtggttcacaagcattgataatatctaagactcatctctactcc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1821064 |
ccgaagcaaatcaaaatgttgtagtaagtgcaaaatgaatggtggttcacaagcattgataatatctaagactcatctctactcc |
1820980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 23663501 - 23663540
Alignment:
| Q |
33 |
gtggttaactttggagttgtctttatataatggtatagat |
72 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23663501 |
gtggttaacttttgagttgtctttatataatggtatagat |
23663540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 20664209 - 20664171
Alignment:
| Q |
31 |
tagtggttaactttggagttgtctttatataatggtata |
69 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
20664209 |
tagtagttaactttggagttgcctttatataatggtata |
20664171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University