View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_6 (Length: 596)
Name: NF11396_high_6
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 187 - 581
Target Start/End: Original strand, 4377498 - 4377892
Alignment:
| Q |
187 |
tgtgttttacatcatgtatgagttgtaacatgtctgtaaatgctgagtgtatattataatacgcagaaatgagttgtatttgcatgtgaaactttaactg |
286 |
Q |
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| T |
4377498 |
tgtgttttacatcatgtatgagttgtaacatgtctgtaaatgctgagtgtatattataatacgcagaaatgagttgtatttgcatgtgaaactttaactg |
4377597 |
T |
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| Q |
287 |
catggacaatatcattcactgtgcatcattctacccactttgatacggcaggtggcaaatgatacccgccacaaaagttgtttttcctactttagattaa |
386 |
Q |
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| T |
4377598 |
catggacaatatcattcactgtgtatcattctacccactttgatacggcaggtggcaaatgatacccgccacaaaagttgtttttcctactttagattaa |
4377697 |
T |
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| Q |
387 |
agtgaaagatcaattgatagtttgatacgaaaggtcaactacacacaaaataagcaatatgctaggatgaccatttataaaatttatgggcctggatatt |
486 |
Q |
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| T |
4377698 |
agtgaaagatcaattgatagtttgatacgaaaggtcaactacacacaaaataagcaatatgctaggatgaccatttataaaatttatgggcctagatatt |
4377797 |
T |
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| Q |
487 |
ttagaactagtaattgatttcagagtaaagtaagtgattttattaagggatttagcacccgatttcagatatcctagactttaagtggtggtatt |
581 |
Q |
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| T |
4377798 |
ttagaactagtaattgatttcagagtaaagtaagtgattttattaagggatttagcacccgatttcagatatcctagactttaagtggtggtatt |
4377892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 4377325 - 4377469
Alignment:
| Q |
14 |
agactgcataacagtgatcctgtacttccacgttgtgaggttattgtgtgatttactgaccctgaaaaatggtccgttgtaagagtttctgttggcttat |
113 |
Q |
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| T |
4377325 |
agactgcataacagtgatcctgtacttccacgttgtgaggttattgtgtgatttactgaccctgaaaaatggtccgttgtaagagtttctgttggcttat |
4377424 |
T |
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| Q |
114 |
cagtggaaacttcaatgcgtactgttttcagtatatagtgtgatt |
158 |
Q |
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| T |
4377425 |
cagtggaaacttcaatgcgtactgttttcagtatatagtgtgatt |
4377469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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