View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_high_8 (Length: 562)
Name: NF11396_high_8
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 224 - 544
Target Start/End: Original strand, 37640193 - 37640513
Alignment:
| Q |
224 |
tgattacataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttc |
323 |
Q |
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| T |
37640193 |
tgattacataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttc |
37640292 |
T |
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| Q |
324 |
ccgcccaaaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacaccgatcctaacgtatgggc |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640293 |
ccgcccaaaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacaccgatcctaacgtatgggc |
37640392 |
T |
|
| Q |
424 |
gtcgcaaatcatctcaacactccgctctaccgccgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactct |
523 |
Q |
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|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640393 |
gtcgcaaatcatctcaacactccgttccaccgctgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactct |
37640492 |
T |
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| Q |
524 |
cccatcgcttggaagcttcta |
544 |
Q |
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||||||||||||||||||||| |
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| T |
37640493 |
cccatcgcttggaagcttcta |
37640513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 37639973 - 37640165
Alignment:
| Q |
16 |
catcatcttcctcagttcaagactcgaattcacattattttttggtcatattccaaaacgccatgaatattttaatctgaaactatcgcgacca------ |
109 |
Q |
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| T |
37639973 |
catcatcttcctcagttcaagactcgaatttacattattttttagccatattccaaaacgccatgaatattttaatctgaaactattgcgaccagatgta |
37640072 |
T |
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| Q |
110 |
-------tagaagtggtggtgtagcaaacctttggtacaacacaacaccatggtgtacatggattaaaatgtttgactctaattttttaatat |
195 |
Q |
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| T |
37640073 |
aaaatagtagaagtggtggtgtagcaaacctttggcacaacacaacaccatggtgtacatggattaaaatgtttgactctaattttttaatat |
37640165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 231 - 544
Target Start/End: Complemental strand, 2157140 - 2156827
Alignment:
| Q |
231 |
ataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttcccgccca |
330 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2157140 |
ataagcacaaaca-ccccatgcattgtcattgacctctgaacactcttactctctcgcgtttctctcgttttgtttgatggctatgcccgttcccgccca |
2157042 |
T |
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| Q |
331 |
aaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacac--cgatcctaacgtatgggcgtcgc |
428 |
Q |
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||| ||| ||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
2157041 |
aact-tcgtcggtgacgatcgttttccatgggacgtgattcttcgccaaaccaactcagctttgctgaacaacacacctgtcctaacgtatgggcgtcgc |
2156943 |
T |
|
| Q |
429 |
aaatcatctcaacactccgctctaccgccgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactctcccat |
528 |
Q |
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|||||| || | |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2156942 |
aaatcacttccatactccgttcctccgccgtcactctcccttccgtcgacctcgctctccgtttagtctctcatttgttttggaaccatcactctcccac |
2156843 |
T |
|
| Q |
529 |
cgcttggaagcttcta |
544 |
Q |
| |
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|| ||||||||||||| |
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| T |
2156842 |
cgtttggaagcttcta |
2156827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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