View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_11 (Length: 531)
Name: NF11396_low_11
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 20553125 - 20552958
Alignment:
| Q |
1 |
cctccatcgtcccaattcatatctatcatcctcacacacttctataacttatgacatgatgcattttaacacaaaacaagatccaactgacccttggttg |
100 |
Q |
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| T |
20553125 |
cctccatcgtcccaattcatatctatcatccttacacacttccataacttatgacatgatgcattttaatacaaaacaagatccaactgacccttggttg |
20553026 |
T |
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| Q |
101 |
taaaagacttttgcttttaatttatataccaagtccacaagnnnnnnnaatgcgttcatagacacttg |
168 |
Q |
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| T |
20553025 |
tataagacttttgctttttatttatataccaagtccacaagtttttttaatgcgttcatagacacttg |
20552958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 20552685 - 20552578
Alignment:
| Q |
421 |
caaccgaatcaatagttttttgtgtatagttttgtattcataacc--ttatctgggaaggcccacccatttgttaa--agaataacgactgattctggat |
516 |
Q |
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| T |
20552685 |
caaccgaatcaatagttttttctgtatagttttgtattcataacctgttatttgggaaggcccacccattagttaaatagaataacgactgattctggat |
20552586 |
T |
|
| Q |
517 |
tcttctct |
524 |
Q |
| |
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|||||||| |
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| T |
20552585 |
tcttctct |
20552578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 20552844 - 20552761
Alignment:
| Q |
280 |
ataaaaatataattagatttatcccgcaaacataatgattttgttaagattttaaatattcaaatggatgtttcatatacattta |
364 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20552844 |
ataaaactataattagatttatcccgcaaacataatgattt-gttaagattttaaatattcaaatggatgtttcatatacattta |
20552761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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