View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_13 (Length: 512)
Name: NF11396_low_13
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 35535463 - 35535961
Alignment:
| Q |
1 |
taattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactctcgcaataaagctttcaagcaaccagcaattccatttttcaa |
100 |
Q |
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| T |
35535463 |
taattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactctcgcaataaagctttcaagcaaccagcaattccatttttcaa |
35535562 |
T |
|
| Q |
101 |
tgaaaactccattgatgaaagcatagccacatgacatccacgggatttcaggaaaatgccaagctcctcaaatgtcattatgtcatcgacaaactctatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
35535563 |
cgaaaactccattgatgaaagcatagccacatgacatccatgggatttcaagaatatgccaagctcttcaaatgtcattatgtcatcaacaaactctatg |
35535662 |
T |
|
| Q |
201 |
tttcctgccaatcatagttcaatctc--aattttatatagagatataaatggtttttcattcctcatactagagtacaataccaaaagatattgtactac |
298 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
35535663 |
tttcctgccaatcatagttcaatctcagaattttatatagagatataaatggcttttcattcctcatactagagtgcaataccaaaagatattgtactgc |
35535762 |
T |
|
| Q |
299 |
gtgtatgtagaattggtggactatcaatgaattcataggatttatcaaaaatgtgaaaacactaactggtaacaactaatacgctgtacaacttcccagg |
398 |
Q |
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|||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
35535763 |
gtgtttgtagaattggtggactatcaatgagttcatgggaattatcaaaaatgtgaaaacgcttactggtaacaactaatgcgctgtacaacttcccagg |
35535862 |
T |
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| Q |
399 |
cgtagtattagttagaaccagaaaagaccgagttgctacagcaatgctaggttctccatccaacctagtagtattgaagcactcctgaacccatttttg |
497 |
Q |
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|| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
35535863 |
agttgtattagatagaacaggaaaagaccgagttgctacagaaatgctaggttctccaaccaatctagtagtattgaagcactcctgaacccatttttg |
35535961 |
T |
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