View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_14 (Length: 482)

Name: NF11396_low_14
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_14
NF11396_low_14
[»] chr4 (23 HSPs)
chr4 (18-471)||(50249691-50250149)
chr4 (197-381)||(37826021-37826203)
chr4 (350-419)||(48734359-48734428)
chr4 (215-305)||(48146945-48147034)
chr4 (215-305)||(48170195-48170284)
chr4 (351-419)||(48865055-48865121)
chr4 (240-306)||(7793664-7793730)
chr4 (313-371)||(7801490-7801548)
chr4 (209-303)||(48155593-48155686)
chr4 (350-419)||(48853665-48853735)
chr4 (217-304)||(45371174-45371260)
chr4 (266-380)||(50669901-50670013)
chr4 (244-306)||(7816825-7816887)
chr4 (350-424)||(45370972-45371046)
chr4 (215-347)||(7766475-7766602)
chr4 (215-306)||(7790915-7791007)
chr4 (280-351)||(7772880-7772946)
chr4 (215-258)||(48864853-48864896)
chr4 (313-367)||(7814330-7814384)
chr4 (313-367)||(7823822-7823876)
chr4 (385-419)||(50681946-50681980)
chr4 (378-419)||(7879391-7879432)
chr4 (57-97)||(50667041-50667081)
[»] chr7 (1 HSPs)
chr7 (349-419)||(48884917-48884987)
[»] chr1 (2 HSPs)
chr1 (204-254)||(24367923-24367973)
chr1 (215-255)||(24323777-24323817)
[»] chr8 (2 HSPs)
chr8 (215-248)||(12201168-12201201)
chr8 (215-248)||(12445596-12445629)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 50250149 - 50249691
Alignment:
Q  18 atccttcaccgttttcttgatattatgaactcttgggtagcatttgtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250149 atccttcaccgttttcttgatattatgaactcttgggtagcatttgtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaac 50250050  T
Q  118 aaaactggaagtcttgatactattcaatgaataaagctaacaaaaacaa------cacacacactactagataagaattagcagaattacagatatcgac 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  50250049 aaaactggaagtcttgatactattcaatgaataaagctaaccaaaacaatacacacacacacactactagataagaattagcagaattacagatatcgac 50249950  T
Q  212 agttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatgataaa 311  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50249949 agttttgtttgtgcgattcactgttatttatgcatttgtaactggatagagttctaaatatatgttgttgtcactgtctgaaattgttttatatgataaa 50249850  T
Q  312 ataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttcagcggactctatt-aactttggcccttgccatttatctgtt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  50249849 ataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttcagtggactctattaaactttggcccttgccatttatctgtt 50249750  T
Q  411 tcaaaccagaaaagnnnnnnnnctaatttcaaaattattcagttctgctctctatgttctt 471  Q
    ||||||||| |||         |||||||||||||||||||||||||||||||||||||||    
T  50249749 tcaaaccaggaaa--aaaaaaactaatttcaaaattattcagttctgctctctatgttctt 50249691  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 197 - 381
Target Start/End: Complemental strand, 37826203 - 37826021
Alignment:
Q  197 attacagatatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaatt 296  Q
    |||||| |||| |||||||||| || || | |||| |||||||||||||| ||||| ||||| ||||| ||| | |||||| |||||||||||||||||     
T  37826203 attacaaatattgacagttttgattatgtgtttcattgttatttatgcatatgtaattggattgagttctaattgtatgtttttgtcactgtctgaaatg 37826104  T
Q  297 gttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaa---aaggttttgttctctaatttcagcggactcta 381  Q
    ||||||||||      ||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  37826103 gttttatatg-----gtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttcagtggactcta 37826021  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 48734428 - 48734359
Alignment:
Q  350 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 419  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  48734428 aaggttttcttctctaattttagcggactctattaactttagcccttgccatttctctgtttcaaaccag 48734359  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 48147034 - 48146945
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 305  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||||||||| |||||    
T  48147034 tttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttct-aatgtatgttgtggtcactgcctgaaattgttctatat 48146945  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 48170284 - 48170195
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 305  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||  | ||| |||||||| |||||||   |||||||| ||||||    
T  48170284 tttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgct-aatgtatgttgtggtcactgctagaaattgtattatat 48170195  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 48865055 - 48865121
Alignment:
Q  351 aggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 419  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||||  |||||||||||||||    
T  48865055 aggttttgttctctaatttcagcggactccattatctatggccattgccatt--tctgtttcaaaccag 48865121  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 7793730 - 7793664
Alignment:
Q  240 tatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 306  Q
    ||||||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7793730 tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7793664  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 7801490 - 7801548
Alignment:
Q  313 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttca 371  Q
    |||| |||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  7801490 taaaataatctaattagtttatgcatgttgaaggagaaaggttttgttctctaatttca 7801548  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 48155686 - 48155593
Alignment:
Q  209 gacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttat 303  Q
    ||||| |||||||||| ||||||||| ||||||| ||||||| ||||||| ||||| ||| | |||||||| |||| ||  ||||||||||||||    
T  48155686 gacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagttctaa-tgtatgttgtggtcattgcttgaaattgttttat 48155593  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 48853665 - 48853735
Alignment:
Q  350 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctg-tttcaaaccag 419  Q
    |||||||||||||||||||| || |||  ||||||| ||||||||||||||||| |||| |||||||||||    
T  48853665 aaggttttgttctctaattttagtggaaactattaagtttggcccttgccatttctctgttttcaaaccag 48853735  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 45371260 - 45371174
Alignment:
Q  217 tgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttata 304  Q
    |||||||| |||||||| |||||||||||||||||  ||||| ||||| | ||| ||||||||  |||||||  ||||||||||||||    
T  45371260 tgtttgtgtgattcacttttatttatgcatgtgtagttggattgagttct-aatgtatgttgtgatcactgttagaaattgttttata 45371174  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 50669901 - 50670013
Alignment:
Q  266 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaag---gttttgttct 362  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| |||| |||     |||| | | ||||||||| |||||||||||||   ||||||||||    
T  50669901 taaatgtatgttgttgtgactgcttgaaattgttttatatggtaaactaa-----tctggttaatttatgcatgttgaaggaaaaagaaggttttgttct 50669995  T
Q  363 ctaatttcagcggactct 380  Q
    ||||||| || |||||||    
T  50669996 ctaattttagtggactct 50670013  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 7816887 - 7816825
Alignment:
Q  244 catgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 306  Q
    ||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7816887 catgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7816825  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 45371046 - 45370972
Alignment:
Q  350 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccagaaaag 424  Q
    ||||||||||||||||| || || ||||||||||||||||  |||||||||| | ||  ||||||||||| ||||    
T  45371046 aaggttttgttctctaaatttagtggactctattaactttatcccttgccatctctcaatttcaaaccaggaaag 45370972  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 347
Target Start/End: Original strand, 7766475 - 7766602
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatgataaaata 314  Q
    |||||||||  | |||| |||| ||||||||||||||||||||| |  || ||||| |||||| ||||||||   ||||||||||| || ||      ||    
T  7766475 tttgtttgtatgcttcaatgttgtttatgcatgtgtaactggattgcattctaaatttatgttattgtcactacttgaaattgtttcatgtg-----gta 7766569  T
Q  315 aattaatctgatgagtttatgcatattgaagga 347  Q
    |||||||||  ||||||||||||| ||||||||    
T  7766570 aattaatcttttgagtttatgcatgttgaagga 7766602  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 7790915 - 7791007
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactgga-tagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 306  Q
    |||||||||| || |||||||||||||||||| |||||||||| | | ||| ||||| |||| || ||||| ||  |||||||| ||||||||    
T  7790915 tttgtttgtgtgactcactgttatttatgcatctgtaactggatttgcgttttaaatgtatgctgatgtcattgcttgaaattgatttatatg 7791007  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 7772946 - 7772880
Alignment:
Q  280 tgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaa 351  Q
    ||||||||  |||||||||||||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatg-----gtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 48864853 - 48864896
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactggat 258  Q
    |||||||||| || ||| ||||||||||||||||||||||||||    
T  48864853 tttgtttgtgtgaatcattgttatttatgcatgtgtaactggat 48864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 7814330 - 7814384
Alignment:
Q  313 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 367  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7814330 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7814384  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 7823822 - 7823876
Alignment:
Q  313 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 367  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7823822 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7823876  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 50681946 - 50681980
Alignment:
Q  385 actttggcccttgccatttatctgtttcaaaccag 419  Q
    ||||||||||||||||||| |||||||||||||||    
T  50681946 actttggcccttgccatttctctgtttcaaaccag 50681980  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 7879391 - 7879432
Alignment:
Q  378 tctattaactttggcccttgccatttatctgtttcaaaccag 419  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7879391 tctactaactttggcccttgtcatttctctgtttcaaaccag 7879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 50667041 - 50667081
Alignment:
Q  57 gcatttgtatgctaatatgtgtttgactgcatttgtaacat 97  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  50667041 gcatttgtaggataatatgtgtttgactgcatttataacat 50667081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 48884917 - 48884987
Alignment:
Q  349 aaaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 419  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||| |||||   |||||||||||||    
T  48884917 aaaggctttgttctctaatttcaatggactctattaactctggcccttgtcatttcattgtttcaaaccag 48884987  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 24367923 - 24367973
Alignment:
Q  204 atatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaact 254  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||||||||||    
T  24367923 atattgacagctttgtttgggcgattcactattatttatgcatgtgtaact 24367973  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 24323777 - 24323817
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgtgtaactg 255  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
T  24323777 tttgtttgtgcgattcgcggttatttatgcatatgtaactg 24323817  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 12201168 - 12201201
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgt 248  Q
    |||||||||| |||||||||||||||||||||||    
T  12201168 tttgtttgtgtgattcactgttatttatgcatgt 12201201  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 12445596 - 12445629
Alignment:
Q  215 tttgtttgtgcgattcactgttatttatgcatgt 248  Q
    |||||||||| |||||||||||||||||||||||    
T  12445596 tttgtttgtgtgattcactgttatttatgcatgt 12445629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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