View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11396_low_15 (Length: 465)
Name: NF11396_low_15
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 183 - 448
Target Start/End: Complemental strand, 34770840 - 34770572
Alignment:
| Q |
183 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctgactat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34770840 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctaactat |
34770741 |
T |
|
| Q |
283 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggaca---tcattga |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34770740 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattga |
34770641 |
T |
|
| Q |
380 |
gccacaaaaccatcgtgtatggacatcctatcaagacaatgtaaaatagtttttggatcaacctcacac |
448 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34770640 |
gccacaaaaccatcgcgtatggacatcctatcaagacaatgtaaagtagtttttggatcaacctcacac |
34770572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 183 - 448
Target Start/End: Complemental strand, 34781785 - 34781517
Alignment:
| Q |
183 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctgactat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34781785 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctaactat |
34781686 |
T |
|
| Q |
283 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggaca---tcattga |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34781685 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattga |
34781586 |
T |
|
| Q |
380 |
gccacaaaaccatcgtgtatggacatcctatcaagacaatgtaaaatagtttttggatcaacctcacac |
448 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34781585 |
gccacaaaaccatcgcgtatggacatcctatcaagacaatgtaaagtagtttttggatcaacctcacac |
34781517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 34771082 - 34770907
Alignment:
| Q |
1 |
atatataactcttaaaacaattgaaaccatctttttacaaacaggatataaaccccaaaaccaacaaaaataaaatacctagaaatatacaaacatgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771082 |
atatataactcttaaaacaattgaaaccatttttttacaaacaggatataaaccccaaaaccaacaaaaataaaatacctagaaatatacaaacatgaca |
34770983 |
T |
|
| Q |
101 |
gaacttaagatatatacaagaacatcaacatttnnnnnnntaattataagaatatcaaaacaatagtttgactcac |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
34770982 |
gaacttaagatatatacaagaacatcaacatttaaaaaaataataatacgaacgtcaaaacaatagtttgactcac |
34770907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 34782027 - 34781852
Alignment:
| Q |
1 |
atatataactcttaaaacaattgaaaccatctttttacaaacaggatataaaccccaaaaccaacaaaaataaaatacctagaaatatacaaacatgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34782027 |
atatataactcttaaaacaattgaaaccatttttttacaaacaggatataaaccccaaaaccaacaaaaataaaatacctagaaatatacaaacatgaca |
34781928 |
T |
|
| Q |
101 |
gaacttaagatatatacaagaacatcaacatttnnnnnnntaattataagaatatcaaaacaatagtttgactcac |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
34781927 |
gaacttaagatatatacaagaacatcaacatttaaaaaaataataatacgaacgtcaaaacaatagtttgactcac |
34781852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University