View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_2 (Length: 718)

Name: NF11396_low_2
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_2
NF11396_low_2
[»] chr1 (24 HSPs)
chr1 (1-300)||(35034318-35034621)
chr1 (500-558)||(14909760-14909818)
chr1 (500-558)||(24963003-24963061)
chr1 (377-461)||(5348248-5348332)
chr1 (509-565)||(9439411-9439467)
chr1 (377-461)||(13509251-13509335)
chr1 (500-560)||(15336486-15336546)
chr1 (511-559)||(28410912-28410960)
chr1 (509-557)||(42736830-42736878)
chr1 (377-461)||(51904073-51904157)
chr1 (509-556)||(2472593-2472640)
chr1 (510-557)||(5330420-5330467)
chr1 (507-558)||(18458809-18458860)
chr1 (269-300)||(34748049-34748080)
chr1 (510-557)||(35034305-35034352)
chr1 (377-482)||(42847586-42847692)
chr1 (377-479)||(13545653-13545755)
chr1 (424-482)||(13545737-13545794)
chr1 (509-559)||(41190158-41190208)
chr1 (377-406)||(7112606-7112635)
chr1 (511-568)||(22604673-22604730)
chr1 (377-406)||(28724445-28724474)
chr1 (416-461)||(33573797-33573841)
chr1 (416-461)||(42736683-42736727)
[»] chr6 (25 HSPs)
chr6 (377-588)||(30381535-30381741)
chr6 (657-718)||(30381405-30381466)
chr6 (657-707)||(30437716-30437766)
chr6 (657-718)||(30420199-30420260)
chr6 (500-558)||(31851757-31851815)
chr6 (424-461)||(2852663-2852700)
chr6 (509-550)||(7054292-7054333)
chr6 (509-557)||(7922317-7922365)
chr6 (509-559)||(10827229-10827280)
chr6 (500-555)||(13114625-13114680)
chr6 (377-461)||(13357467-13357550)
chr6 (519-562)||(29964457-29964500)
chr6 (377-461)||(34715794-34715876)
chr6 (377-407)||(1319264-1319294)
chr6 (377-407)||(7922426-7922456)
chr6 (377-407)||(9286348-9286378)
chr6 (511-557)||(13114398-13114444)
chr6 (509-559)||(16659512-16659562)
chr6 (500-558)||(22574030-22574088)
chr6 (377-467)||(24325625-24325711)
chr6 (377-407)||(25400654-25400684)
chr6 (377-407)||(30245979-30246009)
chr6 (377-407)||(33751818-33751848)
chr6 (671-708)||(30471821-30471858)
chr6 (416-461)||(33561877-33561921)
[»] chr3 (22 HSPs)
chr3 (500-558)||(19624010-19624068)
chr3 (377-461)||(3548216-3548300)
chr3 (377-461)||(12767048-12767130)
chr3 (500-558)||(25110061-25110119)
chr3 (509-557)||(3548364-3548413)
chr3 (500-569)||(45151938-45152006)
chr3 (511-558)||(14220697-14220744)
chr3 (511-558)||(14224924-14224971)
chr3 (511-558)||(15309083-15309129)
chr3 (510-557)||(47115572-47115619)
chr3 (500-562)||(3072416-3072477)
chr3 (377-407)||(25109977-25110007)
chr3 (377-407)||(29313898-29313928)
chr3 (377-407)||(30271656-30271686)
chr3 (377-407)||(36867785-36867815)
chr3 (377-407)||(49872864-49872894)
chr3 (509-559)||(49872958-49873008)
chr3 (377-407)||(51460644-51460674)
chr3 (416-461)||(20957042-20957086)
chr3 (377-406)||(43767771-43767800)
chr3 (263-300)||(49872972-49873009)
chr3 (266-299)||(51252049-51252082)
[»] chr2 (42 HSPs)
chr2 (377-458)||(18665773-18665853)
chr2 (377-461)||(22535563-22535646)
chr2 (509-559)||(20182262-20182312)
chr2 (377-461)||(25227919-25228003)
chr2 (377-461)||(28149528-28149612)
chr2 (500-544)||(32596418-32596462)
chr2 (509-557)||(33641132-33641180)
chr2 (511-562)||(38386170-38386221)
chr2 (510-557)||(43302123-43302170)
chr2 (511-561)||(3364323-3364373)
chr2 (509-559)||(22116153-22116203)
chr2 (509-559)||(33315434-33315484)
chr2 (510-559)||(25077661-25077710)
chr2 (511-559)||(19493459-19493507)
chr2 (507-559)||(26270489-26270540)
chr2 (509-557)||(28149675-28149723)
chr2 (264-300)||(30371383-30371419)
chr2 (500-568)||(34635695-34635763)
chr2 (377-461)||(43301976-43302059)
chr2 (511-559)||(45464622-45464670)
chr2 (511-558)||(1975811-1975858)
chr2 (377-460)||(20182371-20182454)
chr2 (265-300)||(23260319-23260354)
chr2 (377-407)||(3364476-3364506)
chr2 (500-558)||(17328091-17328149)
chr2 (377-407)||(17328204-17328234)
chr2 (510-556)||(18701552-18701598)
chr2 (377-407)||(19493394-19493424)
chr2 (377-407)||(27010076-27010106)
chr2 (424-482)||(27866350-27866407)
chr2 (262-300)||(28484615-28484653)
chr2 (377-407)||(32449836-32449866)
chr2 (507-557)||(37200347-37200396)
chr2 (500-558)||(39094198-39094255)
chr2 (377-461)||(39227905-39227990)
chr2 (500-557)||(19641446-19641503)
chr2 (500-557)||(19840039-19840096)
chr2 (510-559)||(25077426-25077474)
chr2 (519-556)||(25926889-25926926)
chr2 (377-406)||(25926995-25927024)
chr2 (263-300)||(34635703-34635740)
chr2 (416-461)||(34635860-34635904)
[»] scaffold0113 (2 HSPs)
scaffold0113 (500-555)||(28883-28938)
scaffold0113 (377-407)||(28799-28829)
[»] chr4 (24 HSPs)
chr4 (500-559)||(39868466-39868525)
chr4 (500-557)||(14574926-14574984)
chr4 (509-558)||(22272929-22272978)
chr4 (509-558)||(21780121-21780170)
chr4 (377-407)||(2921662-2921692)
chr4 (524-558)||(6595268-6595302)
chr4 (500-557)||(7272266-7272324)
chr4 (377-407)||(21246626-21246656)
chr4 (377-407)||(21780271-21780301)
chr4 (377-407)||(21798482-21798512)
chr4 (377-407)||(22273041-22273071)
chr4 (377-407)||(27579659-27579689)
chr4 (377-407)||(43751157-43751187)
chr4 (511-557)||(46094251-46094297)
chr4 (511-557)||(50138488-50138534)
chr4 (266-300)||(51965372-51965406)
chr4 (377-407)||(56467525-56467555)
chr4 (518-559)||(9001442-9001483)
chr4 (416-461)||(17289895-17289939)
chr4 (512-557)||(21798577-21798622)
chr4 (509-558)||(35539603-35539652)
chr4 (377-406)||(38655971-38656000)
chr4 (377-406)||(45900701-45900730)
chr4 (377-406)||(51396268-51396297)
[»] scaffold0005 (1 HSPs)
scaffold0005 (500-557)||(242391-242449)
[»] chr8 (39 HSPs)
chr8 (500-558)||(14329600-14329658)
chr8 (509-558)||(27198143-27198192)
chr8 (377-461)||(27198257-27198338)
chr8 (377-461)||(43121173-43121255)
chr8 (509-558)||(29309783-29309832)
chr8 (500-559)||(4482280-4482340)
chr8 (500-556)||(38500514-38500569)
chr8 (507-558)||(43121317-43121369)
chr8 (500-563)||(13572534-13572597)
chr8 (500-559)||(39451503-39451562)
chr8 (509-556)||(43400910-43400957)
chr8 (377-407)||(960414-960444)
chr8 (507-557)||(960504-960554)
chr8 (500-554)||(8388117-8388171)
chr8 (266-300)||(9513828-9513862)
chr8 (510-559)||(12317529-12317579)
chr8 (377-407)||(14329515-14329545)
chr8 (510-568)||(23389349-23389407)
chr8 (377-407)||(25277586-25277616)
chr8 (377-407)||(27987407-27987437)
chr8 (377-407)||(28044709-28044739)
chr8 (500-558)||(29309564-29309622)
chr8 (377-407)||(38500428-38500458)
chr8 (262-300)||(39515145-39515183)
chr8 (509-558)||(3912489-3912538)
chr8 (509-558)||(4482044-4482093)
chr8 (262-299)||(12330329-12330366)
chr8 (511-559)||(13567236-13567285)
chr8 (377-406)||(17812063-17812092)
chr8 (681-718)||(20540257-20540294)
chr8 (509-558)||(25277715-25277764)
chr8 (416-461)||(25601808-25601852)
chr8 (257-298)||(26170420-26170461)
chr8 (509-558)||(27987296-27987345)
chr8 (509-558)||(28044598-28044647)
chr8 (263-300)||(34985345-34985382)
chr8 (377-406)||(41565385-41565414)
chr8 (511-556)||(42406224-42406269)
chr8 (377-406)||(43945278-43945307)
[»] chr5 (29 HSPs)
chr5 (500-562)||(12399586-12399648)
chr5 (377-461)||(5718321-5718405)
chr5 (507-558)||(35798690-35798741)
chr5 (509-566)||(10976756-10976813)
chr5 (510-559)||(37204990-37205039)
chr5 (416-461)||(39153543-39153587)
chr5 (509-560)||(23188626-23188677)
chr5 (511-558)||(31861490-31861537)
chr5 (511-557)||(10012817-10012863)
chr5 (377-407)||(20688907-20688937)
chr5 (377-407)||(20698436-20698466)
chr5 (377-407)||(21148911-21148941)
chr5 (377-407)||(22642265-22642295)
chr5 (377-407)||(24098543-24098573)
chr5 (511-560)||(29321318-29321368)
chr5 (377-407)||(31861603-31861633)
chr5 (377-407)||(33052964-33052994)
chr5 (511-557)||(36992994-36993040)
chr5 (377-407)||(39418830-39418860)
chr5 (377-406)||(711351-711380)
chr5 (377-406)||(12399500-12399529)
chr5 (668-717)||(14092173-14092222)
chr5 (263-300)||(20698543-20698580)
chr5 (424-461)||(21149027-21149063)
chr5 (263-300)||(22551519-22551556)
chr5 (416-461)||(26034942-26034986)
chr5 (377-406)||(29754160-29754189)
chr5 (378-407)||(35798598-35798627)
chr5 (263-300)||(37205003-37205040)
[»] chr7 (28 HSPs)
chr7 (377-459)||(19272330-19272411)
chr7 (377-461)||(20041013-20041096)
chr7 (511-558)||(48945183-48945230)
chr7 (511-559)||(31186666-31186714)
chr7 (511-558)||(9915650-9915697)
chr7 (511-558)||(9923562-9923609)
chr7 (511-562)||(26050170-26050221)
chr7 (511-562)||(26059529-26059580)
chr7 (377-407)||(4103846-4103876)
chr7 (266-300)||(5766638-5766672)
chr7 (511-557)||(13279428-13279474)
chr7 (377-407)||(23371596-23371626)
chr7 (509-559)||(24845636-24845686)
chr7 (377-407)||(26930781-26930811)
chr7 (377-407)||(31186781-31186811)
chr7 (659-717)||(33993218-33993276)
chr7 (511-557)||(35158183-35158229)
chr7 (507-557)||(39580173-39580223)
chr7 (377-407)||(43251621-43251651)
chr7 (377-406)||(3307557-3307586)
chr7 (509-558)||(6269527-6269576)
chr7 (377-406)||(9915790-9915819)
chr7 (377-406)||(9923702-9923731)
chr7 (509-558)||(19272458-19272507)
chr7 (377-406)||(23314872-23314901)
chr7 (377-406)||(25077704-25077733)
chr7 (509-558)||(34258432-34258481)
chr7 (510-559)||(44569088-44569137)
[»] scaffold0010 (3 HSPs)
scaffold0010 (377-461)||(26418-26498)
scaffold0010 (509-559)||(26542-26592)
scaffold0010 (509-557)||(26308-26356)
[»] scaffold0769 (3 HSPs)
scaffold0769 (500-568)||(4151-4219)
scaffold0769 (416-461)||(4010-4054)
scaffold0769 (263-300)||(4174-4211)
[»] scaffold0032 (1 HSPs)
scaffold0032 (500-544)||(71665-71709)
[»] scaffold0384 (2 HSPs)
scaffold0384 (265-300)||(4248-4283)
scaffold0384 (512-557)||(4439-4484)
[»] scaffold0136 (1 HSPs)
scaffold0136 (500-559)||(636-695)
[»] scaffold0095 (1 HSPs)
scaffold0095 (500-559)||(10353-10412)
[»] scaffold0740 (1 HSPs)
scaffold0740 (377-407)||(3758-3788)
[»] scaffold0092 (1 HSPs)
scaffold0092 (377-407)||(44469-44499)
[»] scaffold0031 (1 HSPs)
scaffold0031 (377-407)||(1936-1966)
[»] scaffold0021 (1 HSPs)
scaffold0021 (377-407)||(158183-158213)
[»] scaffold0727 (2 HSPs)
scaffold0727 (519-556)||(837-874)
scaffold0727 (377-406)||(943-972)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35034621 - 35034318
Alignment:
Q  1 tgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaattgtgtgttgaacatttgtaatacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35034621 tgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaattgtgtgttgaacatttgtagtacc 35034522  T
Q  101 ccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgattcatgatacaatgatactaaaaccttttatgtaaatggacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  35034521 ccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgatgcatgatacaatgatactaaaaccttt-atgtaaatggacaa 35034423  T
Q  201 cttttagataatgataagaaactttgtagctatttaaaacacacgcgc------atgcataattacaattagggttaatatgtctttactccctgtaata 294  Q
      |||||||||||||||||||||||||||||||| ||||||||| |||      ||||||||||| |||| ||||||||| |||||||  ||||||||||    
T  35034422 tgtttagataatgataagaaactttgtagctattcaaaacacacacgcgcacacatgcataattaaaatt-gggttaataggtctttatcccctgtaata 35034324  T
Q  295 taggtc 300  Q
    ||||||    
T  35034323 taggtc 35034318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 14909818 - 14909760
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||   |||||||||||    
T  14909818 ttacagggaggaaaaccgaaaattacctatattacagagggtaaagcactattaaccct 14909760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 24963003 - 24963061
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| |||||||| | ||||||||||||||||||| || ||||| ||||||||||||    
T  24963003 ttacagggaggaaaatcaaaaataacctatattacagggggtaaaagcctattaaccct 24963061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 5348248 - 5348332
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnncta-aatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         | || ||||||||||||||||| ||||||||| |||||||||||||    
T  5348248 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaataaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 5348332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 9439411 - 9439467
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaattt 565  Q
    ||||||||| || ||||||||||||||| || |||| |||||||||||||| |||||    
T  9439411 ggaaaaccggaattaacctatattacagggggtaaagacctattaaccctataattt 9439467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 13509335 - 13509251
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||| |||||||| || |||||||||||||    
T  13509335 taataggccaaacaaaaacgaaaatttcttgaaaaaaaattaaaattggtttttgtttgg-cttattagaggggtaaatcaaaaca 13509251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 560
Target Start/End: Complemental strand, 15336546 - 15336486
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctag 560  Q
    |||||| | |||||||||||||||||||||||||||| || | |||  |||||||||||||    
T  15336546 ttacagggtggaaaaccgaaaataacctatattacagggggtgaaagactattaaccctag 15336486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 28410960 - 28410912
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||| ||||||| ||||||||||||| ||||||| ||||||||||||||    
T  28410960 aaaatcgaaaatgacctatattacaggggataaagacctattaacccta 28410912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 42736830 - 42736878
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  42736830 ggaaaaccggaaatgacctatattacaggggataaagacctattaaccc 42736878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 51904157 - 51904073
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         | |||||||||||||||||||| ||||||||  |||||||||||||    
T  51904157 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaatgaatttggtttttgtttggcc-tattagggaggtaaatcaaaaca 51904073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 2472593 - 2472640
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacc 556  Q
    |||||| ||||||||||||||||||||| || |||| |||||||||||    
T  2472593 ggaaaatcgaaaataacctatattacagggggtaaagacctattaacc 2472640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 557
Target Start/End: Complemental strand, 5330467 - 5330420
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||| |||||| |||||||||||| ||| |||||||||||||||||    
T  5330467 gaaaactgaaaatgacctatattacatagggtaaaaacctattaaccc 5330420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 18458809 - 18458860
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||||||| |||| ||||||||||||| || |||| |||||||||||||    
T  18458809 gaggaaaaccggaaatgacctatattacagggggtaaagacctattaaccct 18458860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 34748049 - 34748080
Alignment:
Q  269 ttaatatgtctttactccctgtaatataggtc 300  Q
    ||||||||||||||||||||||||||||||||    
T  34748049 ttaatatgtctttactccctgtaatataggtc 34748080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 35034305 - 35034352
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  35034305 gaaaaccggaaatgacctatattacaggggataaagacctattaaccc 35034352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 482
Target Start/End: Complemental strand, 42847692 - 42847586
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg--nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaacagatttttgttaaa 474  Q
    |||||||||||||||||||||||||||||||          || ||||||||||||||||||| ||||||||  |||||||||||||  ||||| ||  |    
T  42847692 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaatatatttggtttttgtttggcc-tattagggaggtaaatcaaaacaattttttttttca 42847594  T
Q  475 gggggtaa 482  Q
    ||||||||    
T  42847593 gggggtaa 42847586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 479
Target Start/End: Complemental strand, 13545755 - 13545653
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt-gnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaacagatttttgttaaag 475  Q
    ||||||||||||||||||||||||||||||          |||| ||||||||||||||| |||||||| || |||||||||||||  ||||| ||| ||    
T  13545755 taataggccaaacaaaaacgaaaatttcttaaaaaaaaattaaaattggtttttgtttgg-cttattagaggggtaaatcaaaacaatttttttttacag 13545657  T
Q  476 gggg 479  Q
    ||||    
T  13545656 gggg 13545653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 13545737 - 13545794
Alignment:
Q  424 gtttttgtttggccttattaggggagtaaatcaaaacagatttttgttaaagggggtaa 482  Q
    ||||||||||||||| ||||| || ||||||||||||| | |||| |||||||||||||    
T  13545737 gtttttgtttggcct-attagcggggtaaatcaaaacaaactttttttaaagggggtaa 13545794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 41190158 - 41190208
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||| |||||||||| ||||||||||||| |||||  ||||||||||||    
T  41190158 ggaaaatcgaaaataacatatattacagagggtaaaatactattaacccta 41190208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 7112606 - 7112635
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  7112606 taataggccaaacaaaaacgaaaatttctt 7112635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 568
Target Start/End: Original strand, 22604673 - 22604730
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttata 568  Q
    ||||||| |||| ||||||||||||| || |||| |||||||||||||| | ||||||    
T  22604673 aaaaccggaaatgacctatattacaggggttaaagacctattaaccctaaattttata 22604730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 28724474 - 28724445
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  28724474 taataggccaaacaaaaacgaaaatttctt 28724445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 33573797 - 33573841
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  33573797 taaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 33573841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 42736727 - 42736683
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||    
T  42736727 taaaattggtttttgtttggcct-attaggagagtaaatcaaaaca 42736683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 7e-48; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 377 - 588
Target Start/End: Complemental strand, 30381741 - 30381535
Alignment:
Q  377 taataggccaaacaaaaacgaaaattt-cttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaacagatttttgttaaag 475  Q
    ||||||||||||||||||||||||||| ||||        |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30381741 taataggccaaacaaaaacgaaaattttcttgaaaaaaaataaaattggtttttgtttggcct-attaggggagtaaatcaaaacagattttttttaaag 30381643  T
Q  476 ggggtaattnnnnnnnnnnnnnnnttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttatactagctc 575  Q
    ||||||| |               ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  30381642 ggggtaaataaataaaaaa-----ttacagtgaggaaaaccgaaaataacctatattacaggggataaagacctattaaccttagaatttatactagctc 30381548  T
Q  576 tgccactaatttg 588  Q
    |||||||||||||    
T  30381547 tgccactaatttg 30381535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 657 - 718
Target Start/End: Complemental strand, 30381466 - 30381405
Alignment:
Q  657 gatgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagcaaaacaatatc 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30381466 gatgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagcaaagcaatatc 30381405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 707
Target Start/End: Complemental strand, 30437766 - 30437716
Alignment:
Q  657 gatgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagc 707  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30437766 gatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagc 30437716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 657 - 718
Target Start/End: Complemental strand, 30420260 - 30420199
Alignment:
Q  657 gatgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagcaaaacaatatc 718  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  30420260 gatgggtatgtcaagtgcattagacacattttgtgggcaagcatatggagcacaacaatatc 30420199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 31851815 - 31851757
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| | |||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  31851815 ttacaggggggaaaaccgaaaatgacctatattacaggggataaagacctattaaccct 31851757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 2852700 - 2852663
Alignment:
Q  424 gtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2852700 gtttttgtttggccttattaggggggtaaatcaaaaca 2852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 7054292 - 7054333
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaaccta 550  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  7054292 ggaaaaccgaaaatgacctatattacagaggataaagaccta 7054333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 7922365 - 7922317
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||||||||    
T  7922365 ggaaaaccaaaaatgacctatattacaggggataaagacctattaaccc 7922317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 10827229 - 10827280
Alignment:
Q  509 ggaaaaccgaaaataacctatattacag-aggataaaaacctattaacccta 559  Q
    |||||||| |||||||| |||||||||| |||||||| ||||||||||||||    
T  10827229 ggaaaaccaaaaataacatatattacaggaggataaagacctattaacccta 10827280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 555
Target Start/End: Original strand, 13114625 - 13114680
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaac 555  Q
    |||||| |||||||||||||||| || |||||||||| || |||| ||||||||||    
T  13114625 ttacagggaggaaaaccgaaaatgacatatattacagggggtaaagacctattaac 13114680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 13357467 - 13357550
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    ||||||||||||||||||||||||||| |          |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  13357467 taataggccaaacaaaaacgaaaatttttgaaaaaaaaataaaattggtttttgtttggcc-tattaggggcgtaaatcaaaaca 13357550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 562
Target Start/End: Complemental strand, 29964500 - 29964457
Alignment:
Q  519 aaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||    
T  29964500 aaatgacctatattacaggggataaaaagctattaaccctagaa 29964457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 34715794 - 34715876
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||        |||| ||| ||||||||||||| | |||||||| ||||||||||||    
T  34715794 taataggccaaacaaaaacgaaaatttcttgaaaaaaaataaaattgatttttgtttggcc-tgttagggga-taaatcaaaaca 34715876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 1319294 - 1319264
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  1319294 taataggccaaacaaaaacgaaaatttcttg 1319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 7922426 - 7922456
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  7922426 taataggccaaacaaaaacgaaaatttcttg 7922456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 9286378 - 9286348
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  9286378 taataggccaaacaaaaacgaaaatttcttg 9286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Complemental strand, 13114444 - 13114398
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||| ||||||||||||| || |||| ||||||||||||    
T  13114444 aaaaccgaaaatgacctatattacagggggtaaagacctattaaccc 13114398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 16659562 - 16659512
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||||| |||| |||||||||||||||| |||||  ||||||||||||    
T  16659562 ggaaaaccggaaatgacctatattacagagggtaaaatactattaacccta 16659512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 22574030 - 22574088
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| ||||||| |||||||| | ||||||||||| || |||| |||||||||||||    
T  22574030 ttacagggaggaaatccgaaaatgatctatattacagggggtaaagacctattaaccct 22574088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 467
Target Start/End: Original strand, 24325625 - 24325711
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaacagatttt 467  Q
    ||||||||||||||||||||||||||||||          ||| ||||||||||||||||| ||||||||  ||||||||||||| |||||    
T  24325625 taataggccaaacaaaaacgaaaatttcttataaaaa---aaaattggtttttgtttggcc-tattagggaggtaaatcaaaacaaatttt 24325711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 25400654 - 25400684
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  25400654 taataggccaaacaaaaacgaaaatttcttg 25400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 30246009 - 30245979
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  30246009 taataggccaaacaaaaacgaaaatttcttg 30245979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 33751818 - 33751848
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  33751818 taataggccaaacaaaaacgaaaatttcttg 33751848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 708
Target Start/End: Complemental strand, 30471858 - 30471821
Alignment:
Q  671 gtgcactagacacattttgtggtcaagcatatggagca 708  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  30471858 gtgcactagaaacattttgtggtcaatcatatggagca 30471821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 33561877 - 33561921
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  33561877 taaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 33561921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 19624010 - 19624068
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  19624010 ttacagagaggaaaaccgaaaatgacctatattacagaggataaagacctattaaccct 19624068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 3548300 - 3548216
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  3548300 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 3548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 12767048 - 12767130
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         ||| ||||||||||||||||| ||||||||| |||||||||||||    
T  12767048 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaaaaattggtttttgtttggcc-tattagggg-gtaaatcaaaaca 12767130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 25110061 - 25110119
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| |||||||||||||||| ||||||||||||| |  |||| |||||||||||||    
T  25110061 ttacagggaggaaaaccgaaaatgacctatattacagggtgtaaagacctattaaccct 25110119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 3548364 - 3548413
Alignment:
Q  509 ggaaaaccgaaaataacctatattacaga-ggataaaaacctattaaccc 557  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  3548364 ggaaaaccgaaaataacctatattacagaggggtaaagacctattaaccc 3548413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 45151938 - 45152006
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttatac 569  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||  |||||||||||| ||| |||||    
T  45151938 ttacagggaggaaaactgaaaatcacctatattacagagg-taaaatactattaaccctaaaatatatac 45152006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Original strand, 14220697 - 14220744
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||| |||||||||||||||| |||||  |||||||||||    
T  14220697 aaaaccgaaaatgacctatattacagagggtaaaatactattaaccct 14220744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Original strand, 14224924 - 14224971
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||| |||||||||||||||| |||||  |||||||||||    
T  14224924 aaaaccgaaaatgacctatattacagagggtaaaatactattaaccct 14224971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 15309129 - 15309083
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||    
T  15309129 aaaaccggaaataacctatattacag-gggtaaaaacctattaaccct 15309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 47115572 - 47115619
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||||||| ||||||||||||| || |||| ||||||||||||    
T  47115572 gaaaaccgaaaatgacctatattacagggggtaaagacctattaaccc 47115619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 3072477 - 3072416
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||||| | ||||||  |||||| |||||||||||||||| |||| |||||||||||||||||    
T  3072477 ttacagggtggaaaattgaaaatgacctatattacagagg-taaagacctattaaccctagaa 3072416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 25110007 - 25109977
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  25110007 taataggccaaacaaaaacgaaaatttcttg 25109977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 29313898 - 29313928
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  29313898 taataggccaaacaaaaacgaaaatttcttg 29313928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 30271656 - 30271686
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  30271656 taataggccaaacaaaaacgaaaatttcttg 30271686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 36867815 - 36867785
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  36867815 taataggccaaacaaaaacgaaaatttcttg 36867785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 49872894 - 49872864
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  49872894 taataggccaaacaaaaacgaaaatttcttg 49872864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 49872958 - 49873008
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||||| |||| ||||||||||||| || |||| ||||||||||||||    
T  49872958 ggaaaaccggaaatgacctatattacagggggtaaagacctattaacccta 49873008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 51460644 - 51460674
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  51460644 taataggccaaacaaaaacgaaaatttcttg 51460674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 20957086 - 20957042
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||    
T  20957086 taaaattggtttttgtttggcct-attaggggggtaaatcaaaaca 20957042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 43767771 - 43767800
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  43767771 taataggccaaacaaaaacgaaaatttctt 43767800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 49873009 - 49872972
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49873009 ttagggttaataggtctttaccccctgtaatataggtc 49872972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 51252049 - 51252082
Alignment:
Q  266 gggttaatatgtctttactccctgtaatataggt 299  Q
    ||||||||| ||||||||||||||||||||||||    
T  51252049 gggttaataggtctttactccctgtaatataggt 51252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 18665853 - 18665773
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaa 458  Q
    |||||||||||||||||||||||||||||||        |||| ||||||||||||||||| ||||||||| ||||||||||    
T  18665853 taataggccaaacaaaaacgaaaatttcttgaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaa 18665773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 22535563 - 22535646
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    ||||||||||||||||||||||||||| |||        |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  22535563 taataggccaaacaaaaacgaaaattttttgaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 22535646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 20182312 - 20182262
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  20182312 ggaaaatcgaaaatgacctatattacaggggataaaaacctattaacccta 20182262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 25228003 - 25227919
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  25228003 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 25227919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 28149612 - 28149528
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  28149612 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 28149528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 544
Target Start/End: Complemental strand, 32596462 - 32596418
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaa 544  Q
    |||||| |||||||||||||||||||||||||||||| |||||||    
T  32596462 ttacagggaggaaaaccgaaaataacctatattacaggggataaa 32596418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 33641180 - 33641132
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  33641180 ggaaaaccgaaaatgacctatattacagagggtaaagacctattaaccc 33641132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 38386170 - 38386221
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||||| ||||||||||||||||||| ||||||| || ||||||||||||||    
T  38386170 aaaaccaaaaataacctatattacaggggataaagacatattaaccctagaa 38386221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 43302123 - 43302170
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  43302123 gaaaaccgaaaataacctatattacatgggataaagacctattaaccc 43302170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 3364373 - 3364323
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccctaga 561  Q
    |||||||||||| || |||||||||| ||||||| ||||||||||||||||    
T  3364373 aaaaccgaaaatgacttatattacaggggataaagacctattaaccctaga 3364323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 22116203 - 22116153
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  22116203 ggaaaaccgaaaatgacctatattacagggggtaaagacctattaacccta 22116153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 33315434 - 33315484
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||||| |||||||||||||||| |||||  ||||||||||||    
T  33315434 ggaaaaccgaaaatgacctatattacagagggtaaaatactattaacccta 33315484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 25077661 - 25077710
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||||||||||||||||||||  | ||||||| ||||||||||||||    
T  25077661 gaaaaccgaaaataacctatattattggggataaatacctattaacccta 25077710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 19493459 - 19493507
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  19493459 aaaaccgaaaatgacctatattacagggggtaaagacctattaacccta 19493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 26270540 - 26270489
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||| |||||||||||||||||||||||| |||| | ||||||||||||    
T  26270540 gaggaaaatcgaaaataacctatattacagagg-taaagatctattaacccta 26270489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 28149675 - 28149723
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||| |||| ||||||||||||| || |||||||||||||||||    
T  28149675 ggaaaaccggaaatgacctatattacagggggtaaaaacctattaaccc 28149723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 30371383 - 30371419
Alignment:
Q  264 tagggttaatatgtctttactccctgtaatataggtc 300  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30371383 tagggttaataggtctttactccctgtaatataggtc 30371419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 568
Target Start/End: Complemental strand, 34635763 - 34635695
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttata 568  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| |||||||||||||| ||| ||||    
T  34635763 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccctaaaatctata 34635695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 43302059 - 43301976
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  43302059 taataggccaaacaaaaacgaaaatttcttgaaaaaaaagtaaaattggtttttgtttggcc-tattagggg-gtaaatcaaaaca 43301976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 45464622 - 45464670
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||| |||||||||||||  | |||||||||||||||||||    
T  45464622 aaaaccgaaaatgacctatattacaggaggtaaaaacctattaacccta 45464670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Original strand, 1975811 - 1975858
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||||||||||||||||||||||| | |||||  |||||||||||    
T  1975811 aaaaccgaaaataacctatattacagaaggtaaaacactattaaccct 1975858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 20182371 - 20182454
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaac 460  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| |||||| || ||||||||||||    
T  20182371 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaataaaattggtttttgtttggcc-tattagaggggtaaatcaaaac 20182454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 23260319 - 23260354
Alignment:
Q  265 agggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||| |||||||||||||||||||||||||    
T  23260319 agggttaataggtctttactccctgtaatataggtc 23260354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 3364506 - 3364476
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  3364506 taataggccaaacaaaaacgaaaatttcttg 3364476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 17328149 - 17328091
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| |||||||||||||    
T  17328149 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccct 17328091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 17328204 - 17328234
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  17328204 taataggccaaacaaaaacgaaaatttcttg 17328234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 556
Target Start/End: Complemental strand, 18701598 - 18701552
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaacc 556  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  18701598 gaaaaccaaaaatgacctatattacaggggataaagacctattaacc 18701552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 19493424 - 19493394
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  19493424 taataggccaaacaaaaacgaaaatttcttg 19493394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 27010076 - 27010106
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  27010076 taataggccaaacaaaaacgaaaatttcttg 27010106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 27866350 - 27866407
Alignment:
Q  424 gtttttgtttggccttattaggggagtaaatcaaaacagatttttgttaaagggggtaa 482  Q
    ||||||||||||||| |||||||| |||||||||||||  ||||| ||| |||||||||    
T  27866350 gtttttgtttggcct-attaggggggtaaatcaaaacaatttttttttacagggggtaa 27866407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 28484653 - 28484615
Alignment:
Q  262 attagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  28484653 attaggattaataggtctttactccctgtaatataggtc 28484615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 32449866 - 32449836
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  32449866 taataggccaaacaaaaacgaaaatttcttg 32449836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 37200396 - 37200347
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||||||| ||||||||||||| || |||| ||||||||||||    
T  37200396 gaggaaaaccgaaaatgacctatattacag-gggtaaagacctattaaccc 37200347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 39094255 - 39094198
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| ||||||||||| || ||||||||||||||| || |||| |||||||||||||    
T  39094255 ttacagggaggaaaaccggaactaacctatattacag-gggtaaagacctattaaccct 39094198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 39227905 - 39227990
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnc--taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    ||||||||||||||||||| |||||||||||          |||| ||||||||||||||||| |||||| ||||||||||||||||    
T  39227905 taataggccaaacaaaaacaaaaatttcttgaaaaaaaaaataaaattggtttttgtttggcc-tattagaggagtaaatcaaaaca 39227990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 19641503 - 19641446
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| ||||||||||||    
T  19641503 ttacagggtggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 19641446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 19840096 - 19840039
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| ||||||||||||    
T  19840096 ttacagggtggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 19840039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 25077474 - 25077426
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||||||||| |||||||||||||||| |||| | ||||||||||||    
T  25077474 gaaaaccgaaaatgacctatattacagagg-taaagatctattaacccta 25077426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 25926926 - 25926889
Alignment:
Q  519 aaataacctatattacagaggataaaaacctattaacc 556  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  25926926 aaatgacctatattacagaggataaagacctattaacc 25926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 25926995 - 25927024
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  25926995 taataggccaaacaaaaacgaaaatttctt 25927024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 34635703 - 34635740
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34635703 ttagggttaataggtctttaccccctgtaatataggtc 34635740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 34635860 - 34635904
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  34635860 taaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 34635904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 555
Target Start/End: Original strand, 28883 - 28938
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaac 555  Q
    |||||| || |||||||||||||||||||||||||||| |||||| ||||||||||    
T  28883 ttacagagaagaaaaccgaaaataacctatattacagaagataaagacctattaac 28938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 28829 - 28799
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  28829 taataggccaaacaaaaacgaaaatttcttg 28799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 39868525 - 39868466
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||  |||||||||||||||||||||||||| || ||||||||||||| |||||    
T  39868525 ttacagtgaaaaaaaccgaaaataacctatattacagggggtaaaaacctattatcccta 39868466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 557
Target Start/End: Original strand, 14574926 - 14574984
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattaca-gaggataaaaacctattaaccc 557  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  14574926 ttacagggaggaaaaccgaaaataacctatattacaggaggataaaacactattaaccc 14574984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 22272978 - 22272929
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  22272978 ggaaaaccgaaaatgacctatattacagggggtaaaaacctattaaccct 22272929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 21780170 - 21780121
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| ||||||||||||| || |||| |||||||||||||    
T  21780170 ggaaaaccgaaaatgacctatattacagggggtaaagacctattaaccct 21780121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 2921662 - 2921692
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  2921662 taataggccaaacaaaaacgaaaatttcttg 2921692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 558
Target Start/End: Original strand, 6595268 - 6595302
Alignment:
Q  524 acctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||||| ||||||||||||||||||    
T  6595268 acctatattacagagggtaaaaacctattaaccct 6595302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 7272324 - 7272266
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattac-agaggataaaaacctattaaccc 557  Q
    |||||| | |||||||||||||||||||||||||| || || |||| ||||||||||||    
T  7272324 ttacaggggggaaaaccgaaaataacctatattacaagggggtaaagacctattaaccc 7272266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 21246656 - 21246626
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  21246656 taataggccaaacaaaaacgaaaatttcttg 21246626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 21780301 - 21780271
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  21780301 taataggccaaacaaaaacgaaaatttcttg 21780271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 21798512 - 21798482
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  21798512 taataggccaaacaaaaacgaaaatttcttg 21798482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 22273041 - 22273071
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  22273041 taataggccaaacaaaaacgaaaatttcttg 22273071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 27579689 - 27579659
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  27579689 taataggccaaacaaaaacgaaaatttcttg 27579659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 43751157 - 43751187
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  43751157 taataggccaaacaaaaacgaaaatttcttg 43751187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 46094251 - 46094297
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||| |||| |||||||||||||||| |||| ||||||||||||    
T  46094251 aaaaccggaaatgacctatattacagagggtaaagacctattaaccc 46094297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Complemental strand, 50138534 - 50138488
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||| ||||||||||||| || |||| ||||||||||||    
T  50138534 aaaaccgaaaatgacctatattacagggggtaaagacctattaaccc 50138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 51965372 - 51965406
Alignment:
Q  266 gggttaatatgtctttactccctgtaatataggtc 300  Q
    ||||||||| |||||||||||||||||||||||||    
T  51965372 gggttaataggtctttactccctgtaatataggtc 51965406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 56467525 - 56467555
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  56467525 taataggccaaacaaaaacgaaaatttcttg 56467555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 9001483 - 9001442
Alignment:
Q  518 aaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  9001483 aaaataatctatattacagggggtaaaaacctattaacccta 9001442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 17289895 - 17289939
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  17289895 taaaattggtttttgtttggcc-tattaggggcgtaaatcaaaaca 17289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 21798577 - 21798622
Alignment:
Q  512 aaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||| |||||| ||||||||||||| ||||||| ||||||||||||    
T  21798577 aaactgaaaatgacctatattacaggggataaagacctattaaccc 21798622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 35539652 - 35539603
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||| |||||    
T  35539652 ggaaaaccaaaaatgacctatattacaggggataaagacctattgaccct 35539603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 38656000 - 38655971
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  38656000 taataggccaaacaaaaacgaaaatttctt 38655971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 45900730 - 45900701
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  45900730 taataggccaaacaaaaacgaaaatttctt 45900701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 51396268 - 51396297
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  51396268 taataggccaaacaaaaacgaaaatttctt 51396297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 242449 - 242391
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattaca-gaggataaaaacctattaaccc 557  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  242449 ttacagggaggaaaaccgaaaataacctatattacaggaggataaaacactattaaccc 242391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 14329600 - 14329658
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| |||||||||||||||| ||||||||||||| || |||| |||||||||||||    
T  14329600 ttacagggaggaaaaccgaaaatgacctatattacagggggtaaagacctattaaccct 14329658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 27198192 - 27198143
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  27198192 ggaaaaccgaaaatgacctatattacaggggataaagacctattaaccct 27198143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 27198257 - 27198338
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||| | ||||||||| |||||||||||||    
T  27198257 taataggccaaacaaaaacgaaaatttcttgaaaaaaa--aaatttggtttttgtttgg-catattaggggggtaaatcaaaaca 27198338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 43121255 - 43121173
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||| ||||||        |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  43121255 taataggccaaacaaaaacgaaaaattcttgaaaaaaa-taaaattgatttttgtttggcct-attaggggagtaaatcaaaaca 43121173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 29309783 - 29309832
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||||| |||| ||||||||||||| || ||||||||||||||||||    
T  29309783 ggaaaaccggaaatgacctatattacagggggtaaaaacctattaaccct 29309832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 4482280 - 4482340
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattaca-gaggataaaaacctattaacccta 559  Q
    |||||| |||||||||||||||| || ||||||||| | || |||||||||||||||||||    
T  4482280 ttacagggaggaaaaccgaaaatgacttatattacagggggttaaaaacctattaacccta 4482340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 556
Target Start/End: Original strand, 38500514 - 38500569
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaacc 556  Q
    |||||| |||||||||||||||| ||||||||||||| || |||| |||||||||||    
T  38500514 ttacagagaggaaaaccgaaaatgacctatattacag-gggtaaagacctattaacc 38500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 43121317 - 43121369
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacaga-ggataaaaacctattaaccct 558  Q
    |||||||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  43121317 gaggaaaaccaaaaataatctatattacagagggataaagacctattaaccct 43121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 563
Target Start/End: Complemental strand, 13572597 - 13572534
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaat 563  Q
    |||||| | |||||||||||||| ||||||||||||| || |||||  ||||||||||| ||||    
T  13572597 ttacagggtggaaaaccgaaaatgacctatattacagggggtaaaacactattaacccttgaat 13572534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 39451562 - 39451503
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||| |||||||||| ||||| || ||||||| || || |||||||||||||||||||    
T  39451562 ttacagggaggaaaaccaaaaatgacttatattagagggggtaaaaacctattaacccta 39451503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 43400910 - 43400957
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacc 556  Q
    |||||||||||||| |||||||||| ||||| |||| |||||||||||    
T  43400910 ggaaaaccgaaaatgacctatattagagagggtaaagacctattaacc 43400957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 960444 - 960414
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  960444 taataggccaaacaaaaacgaaaatttcttg 960414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 960504 - 960554
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||||| |||| ||||||||||||| || |||| ||||||||||||    
T  960504 gaggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 960554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 8388171 - 8388117
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaa 554  Q
    |||||| ||||||||||| |||| ||||||||||||| || |||| |||||||||    
T  8388171 ttacagggaggaaaaccggaaattacctatattacagggggtaaagacctattaa 8388117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 9513828 - 9513862
Alignment:
Q  266 gggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||||||||| ||||||||||||||||    
T  9513828 gggttaatatgtctttaccccctgtaatataggtc 9513862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 12317579 - 12317529
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaac-ctattaacccta 559  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||||||||    
T  12317579 gaaaaccgaaaataacctatattacaggggtgaaaaacactattaacccta 12317529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 14329545 - 14329515
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  14329545 taataggccaaacaaaaacgaaaatttcttg 14329515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 568
Target Start/End: Original strand, 23389349 - 23389407
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttata 568  Q
    ||||||||||||| ||||||||||||| || |||||  |||||||||||  ||||||||    
T  23389349 gaaaaccgaaaatgacctatattacagtgggtaaaacactattaaccctttaatttata 23389407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 25277586 - 25277616
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  25277586 taataggccaaacaaaaacgaaaatttcttg 25277616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 27987407 - 27987437
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  27987407 taataggccaaacaaaaacgaaaatttcttg 27987437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 28044709 - 28044739
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  28044709 taataggccaaacaaaaacgaaaatttcttg 28044739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 29309622 - 29309564
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| |||||||||||||    
T  29309622 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccct 29309564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 38500458 - 38500428
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  38500458 taataggccaaacaaaaacgaaaatttcttg 38500428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 39515183 - 39515145
Alignment:
Q  262 attagggttaatatgtctttactccctgtaatataggtc 300  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  39515183 attagggttaataggcctttactccctgtaatataggtc 39515145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 3912489 - 3912538
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| ||||||||||||| || |||| || ||||||||||    
T  3912489 ggaaaaccgaaaatgacctatattacagggggtaaagacttattaaccct 3912538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 4482093 - 4482044
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||||| |||| || |||||||||| || ||||||||||||||||||    
T  4482093 ggaaaaccggaaatgacatatattacagggggtaaaaacctattaaccct 4482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 12330329 - 12330366
Alignment:
Q  262 attagggttaatatgtctttactccctgtaatataggt 299  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  12330329 attagggttaataggtctttaccccctgtaatataggt 12330366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 13567285 - 13567236
Alignment:
Q  511 aaaaccgaaaataacctatattaca-gaggataaaaacctattaacccta 559  Q
    |||||||||||| || ||||||||| | ||||||||||||||||||||||    
T  13567285 aaaaccgaaaatgacttatattacaaggggataaaaacctattaacccta 13567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 17812063 - 17812092
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  17812063 taataggccaaacaaaaacgaaaatttctt 17812092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 718
Target Start/End: Original strand, 20540257 - 20540294
Alignment:
Q  681 cacattttgtggtcaagcatatggagcaaaacaatatc 718  Q
    |||||||||||||||||||||||||||| | |||||||    
T  20540257 cacattttgtggtcaagcatatggagcacaccaatatc 20540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 25277715 - 25277764
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||||| |||| ||||||||||||| || |||| |||||||||||||    
T  25277715 ggaaaaccggaaatgacctatattacagggggtaaagacctattaaccct 25277764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 25601852 - 25601808
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||    
T  25601852 taaaattggtttttgtttggcct-attaggggggtaaatcaaaaca 25601808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 26170461 - 26170420
Alignment:
Q  257 ttacaattagggttaatatgtctttactccctgtaatatagg 298  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  26170461 ttacatttagggttaatatgtctttaccccctgtaatttagg 26170420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 27987345 - 27987296
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| |||||||||| || || |||| |||||||||||||    
T  27987345 ggaaaaccgaaaatgacctatattatagggggtaaagacctattaaccct 27987296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 28044647 - 28044598
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||| |||||||||| || || |||| |||||||||||||    
T  28044647 ggaaaaccgaaaatgacctatattatagggggtaaagacctattaaccct 28044598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 34985382 - 34985345
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34985382 ttagggttaataggtctttaccccctgtaatataggtc 34985345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 41565385 - 41565414
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  41565385 taataggccaaacaaaaacgaaaatttctt 41565414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 42406269 - 42406224
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaacc 556  Q
    ||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  42406269 aaaaccggaaataacctatattacaggggataaagacctgttaacc 42406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 43945278 - 43945307
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  43945278 taataggccaaacaaaaacgaaaatttctt 43945307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 12399586 - 12399648
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||||| | |||||||||||||||||||||||||||| || |||| |||||||||||| ||||    
T  12399586 ttacaggggggaaaaccgaaaataacctatattacagggggtaaagacctattaacccaagaa 12399648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 5718405 - 5718321
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg-nnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  5718405 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaataaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 5718321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 35798690 - 35798741
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||| |||||||    
T  35798690 gaggaaaaccgaaaatgacctatattacaggggataaagacctactaaccct 35798741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 10976756 - 10976813
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaattta 566  Q
    ||||||||| |||| ||||||||||||| || |||| |||||||||||||| ||||||    
T  10976756 ggaaaaccggaaatgacctatattacagggggtaaagacctattaaccctataattta 10976813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 37204990 - 37205039
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||||||||||| |||||||||||||||| |||| || |||||||||||    
T  37204990 gaaaaccgaaaatgacctatattacagagggtaaagacatattaacccta 37205039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 39153543 - 39153587
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  39153543 taaaattggtttttgtttggcct-attaggggagtaaatcaaaaca 39153587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 23188677 - 23188626
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctag 560  Q
    ||||||||||||||||||||||||||||  | |||||  |||||||||||||    
T  23188677 ggaaaaccgaaaataacctatattacaggaggtaaaacactattaaccctag 23188626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 31861537 - 31861490
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||| |||| ||||||||||||| ||||||| |||||||||||||    
T  31861537 aaaaccggaaatgacctatattacaggggataaagacctattaaccct 31861490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 10012817 - 10012863
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||| ||| || |||||||||||||||||||| ||||||||||||    
T  10012817 aaaaccaaaagtaccctatattacagaggataaagacctattaaccc 10012863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 20688907 - 20688937
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  20688907 taataggccaaacaaaaacgaaaatttcttg 20688937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 20698466 - 20698436
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  20698466 taataggccaaacaaaaacgaaaatttcttg 20698436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 21148911 - 21148941
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  21148911 taataggccaaacaaaaacgaaaatttcttg 21148941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 22642295 - 22642265
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  22642295 taataggccaaacaaaaacgaaaatttcttg 22642265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 24098543 - 24098573
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  24098543 taataggccaaacaaaaacgaaaatttcttg 24098573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 29321318 - 29321368
Alignment:
Q  511 aaaaccgaaaataacctatattaca-gaggataaaaacctattaaccctag 560  Q
    |||||| ||||| |||||||||||| ||||||||| |||||||||||||||    
T  29321318 aaaaccaaaaatgacctatattacatgaggataaagacctattaaccctag 29321368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 31861603 - 31861633
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  31861603 taataggccaaacaaaaacgaaaatttcttg 31861633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 33052994 - 33052964
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  33052994 taataggccaaacaaaaacgaaaatttcttg 33052964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 36992994 - 36993040
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||| |||| |||||||||||||||| |||| ||||||||||||    
T  36992994 aaaaccggaaatgacctatattacagagggtaaagacctattaaccc 36993040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 39418830 - 39418860
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  39418830 taataggccaaacaaaaacgaaaatttcttg 39418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 711351 - 711380
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  711351 taataggccaaacaaaaacgaaaatttctt 711380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 12399529 - 12399500
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  12399529 taataggccaaacaaaaacgaaaatttctt 12399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 717
Target Start/End: Original strand, 14092173 - 14092222
Alignment:
Q  668 caagtgcactagacacattttgtggtcaagcatatggagcaaaacaatat 717  Q
    |||||||| |||| || || ||||| ||||||||||||||||||||||||    
T  14092173 caagtgcattagaaactttatgtggacaagcatatggagcaaaacaatat 14092222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 20698580 - 20698543
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  20698580 ttagggttaataggtctttacttcctgtaatataggtc 20698543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 21149027 - 21149063
Alignment:
Q  424 gtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21149027 gtttttgtttggcct-attaggggagtaaatcaaaaca 21149063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 22551519 - 22551556
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  22551519 ttagggttaataggtctttaccccctgtaatataggtc 22551556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 26034986 - 26034942
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||    
T  26034986 taaaattggtttttgtttggcct-attaggggggtaaatcaaaaca 26034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 29754160 - 29754189
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  29754160 taataggccaaacaaaaacgaaaatttctt 29754189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 35798627 - 35798598
Alignment:
Q  378 aataggccaaacaaaaacgaaaatttcttg 407  Q
    ||||||||||||||||||||||||||||||    
T  35798627 aataggccaaacaaaaacgaaaatttcttg 35798598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 37205040 - 37205003
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  37205040 ttagggttaatatgtctttaccctctgtaatataggtc 37205003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 19272330 - 19272411
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaa 459  Q
    |||||||||||||||||||||||||||||||         ||| ||||||||||||||||| ||||||||| |||||||||||    
T  19272330 taataggccaaacaaaaacgaaaatttcttgaaaaaaaaaaaaattggtttttgtttggcc-tattaggggggtaaatcaaaa 19272411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 20041013 - 20041096
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||        |||| || |||||||||||||| ||||||||| ||||| |||||||    
T  20041013 taataggccaaacaaaaacgaaaatttcttgaaaaaaaataaaattagtttttgtttggcc-tattaggggggtaaaacaaaaca 20041096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 48945230 - 48945183
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  48945230 aaaaccaaaaatgacctatattacagagggtaaaaacctattaaccct 48945183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 31186714 - 31186666
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||| ||||||| |||||||||||||||| |||| ||||||||||||||    
T  31186714 aaaatcgaaaatgacctatattacagagggtaaagacctattaacccta 31186666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 9915697 - 9915650
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||| |||||||||||||||||||| || |||| |||||||||||||    
T  9915697 aaaactgaaaataacctatattacagggggtaaagacctattaaccct 9915650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 9923609 - 9923562
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||| |||||||||||||||||||| || |||| |||||||||||||    
T  9923609 aaaactgaaaataacctatattacagggggtaaagacctattaaccct 9923562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 26050221 - 26050170
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||||||||||| |||||||||| || || |||| |||||||||||||||||    
T  26050221 aaaaccgaaaatgacctatattagagggggtaaagacctattaaccctagaa 26050170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 26059580 - 26059529
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaa 562  Q
    |||||||||||| |||||||||| || || |||| |||||||||||||||||    
T  26059580 aaaaccgaaaatgacctatattagagggggtaaagacctattaaccctagaa 26059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 4103846 - 4103876
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  4103846 taataggccaaacaaaaacgaaaatttcttg 4103876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 5766638 - 5766672
Alignment:
Q  266 gggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||||||||| ||||||||||||||||    
T  5766638 gggttaatatgtctttaccccctgtaatataggtc 5766672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 13279428 - 13279474
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||| ||||||||||||| || |||| ||||||||||||    
T  13279428 aaaaccgaaaatgacctatattacagggggtaaagacctattaaccc 13279474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 23371626 - 23371596
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  23371626 taataggccaaacaaaaacgaaaatttcttg 23371596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 24845686 - 24845636
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||||| |||||||||||||  | |||| ||||||||||||||    
T  24845686 ggaaaaccgaaaatgacctatattacaggaggtaaagacctattaacccta 24845636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 26930811 - 26930781
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  26930811 taataggccaaacaaaaacgaaaatttcttg 26930781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 31186781 - 31186811
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  31186781 taataggccaaacaaaaacgaaaatttcttg 31186811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 717
Target Start/End: Original strand, 33993218 - 33993276
Alignment:
Q  659 tgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagcaaaacaatat 717  Q
    ||||| || |||||||| |||| ||| | ||||| ||||||||||||||||||||||||    
T  33993218 tgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatat 33993276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 557
Target Start/End: Complemental strand, 35158229 - 35158183
Alignment:
Q  511 aaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  35158229 aaaaccgaaaatgacctatattacaggggataaaacactattaaccc 35158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 39580173 - 39580223
Alignment:
Q  507 gaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||||| |||| ||||||||||||| || |||| ||||||||||||    
T  39580173 gaggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 39580223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 43251621 - 43251651
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  43251621 taataggccaaacaaaaacgaaaatttcttg 43251651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 3307557 - 3307586
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  3307557 taataggccaaacaaaaacgaaaatttctt 3307586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 6269576 - 6269527
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    ||||||| |||||| ||||||||||||| || |||| |||||||||||||    
T  6269576 ggaaaactgaaaatgacctatattacagggggtaaagacctattaaccct 6269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 9915819 - 9915790
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  9915819 taataggccaaacaaaaacgaaaatttctt 9915790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 9923731 - 9923702
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  9923731 taataggccaaacaaaaacgaaaatttctt 9923702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 19272458 - 19272507
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||| ||||| ||||||||||||| || |||| |||||||||||||    
T  19272458 ggaaaaccaaaaatgacctatattacagggggtaaagacctattaaccct 19272507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 23314901 - 23314872
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  23314901 taataggccaaacaaaaacgaaaatttctt 23314872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 25077733 - 25077704
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  25077733 taataggccaaacaaaaacgaaaatttctt 25077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 34258432 - 34258481
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccct 558  Q
    |||||||||||||||||| |||||| ||||| |||||  |||||||||||    
T  34258432 ggaaaaccgaaaataacccatattatagagggtaaaacactattaaccct 34258481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 44569088 - 44569137
Alignment:
Q  510 gaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    ||||| ||||||| |||| |||||||| ||||||| ||||||||||||||    
T  44569088 gaaaatcgaaaatgacctgtattacaggggataaagacctattaacccta 44569137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 26418 - 26498
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttgnnnnnnnctaaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||||||||||||||||||||||||||||||         ||| ||||||||||||||||| ||||||||| |||||||||||||    
T  26418 taataggccaaacaaaaacgaaaatttcttgaaaaaa---aaaattggtttttgtttggcc-tattaggggggtaaatcaaaaca 26498  T

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Target: scaffold0010; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 26542 - 26592
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||||||||||| |||||||||||| ||| |||| ||||||||||||||    
T  26542 ggaaaaccgaaaatgacctatattacaaagggtaaacacctattaacccta 26592  T

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Target: scaffold0010; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 26356 - 26308
Alignment:
Q  509 ggaaaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    |||||||||||||| ||||||||||||| || |||| ||||||||||||    
T  26356 ggaaaaccgaaaatgacctatattacagggggtaaagacctattaaccc 26308  T

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Target: scaffold0769 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 568
Target Start/End: Original strand, 4151 - 4219
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaaccctagaatttata 568  Q
    |||||| | ||||||||| |||| ||||||||||||| || |||| |||||||||||||| ||| ||||    
T  4151 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccctaaaatctata 4219  T

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Target: scaffold0769; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 4054 - 4010
Alignment:
Q  416 taaatttggtttttgtttggccttattaggggagtaaatcaaaaca 461  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||    
T  4054 taaaattggtttttgtttggcct-attaggggggtaaatcaaaaca 4010  T

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Target: scaffold0769; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 4211 - 4174
Alignment:
Q  263 ttagggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  4211 ttagggttaataggtctttaccccctgtaatataggtc 4174  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 544
Target Start/End: Complemental strand, 71709 - 71665
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaa 544  Q
    |||||| ||||||||||||||||||| |||||||||| |||||||    
T  71709 ttacagggaggaaaaccgaaaataacatatattacaggggataaa 71665  T

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Target: scaffold0384 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 4248 - 4283
Alignment:
Q  265 agggttaatatgtctttactccctgtaatataggtc 300  Q
    |||||||||| |||||||||||||||||||||||||    
T  4248 agggttaataggtctttactccctgtaatataggtc 4283  T

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Target: scaffold0384; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 4439 - 4484
Alignment:
Q  512 aaaccgaaaataacctatattacagaggataaaaacctattaaccc 557  Q
    ||||||||||| ||||||||||||| || |||| ||||||||||||    
T  4439 aaaccgaaaatgacctatattacagggggtaaagacctattaaccc 4484  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 636 - 695
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||| | ||||||||  |||| |||||||||||||||| |||| ||||||||||||||    
T  636 ttacaggggggaaaaccataaatgacctatattacagagggtaaagacctattaacccta 695  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 10412 - 10353
Alignment:
Q  500 ttacagtgaggaaaaccgaaaataacctatattacagaggataaaaacctattaacccta 559  Q
    |||||| |||||||||| ||||| || ||||||| || || |||||||||||||||||||    
T  10412 ttacagggaggaaaaccaaaaatgacttatattagagggggtaaaaacctattaacccta 10353  T

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Target: scaffold0740 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 3758 - 3788
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  3758 taataggccaaacaaaaacgaaaatttcttg 3788  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 44469 - 44499
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  44469 taataggccaaacaaaaacgaaaatttcttg 44499  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 1936 - 1966
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  1936 taataggccaaacaaaaacgaaaatttcttg 1966  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 158213 - 158183
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttcttg 407  Q
    |||||||||||||||||||||||||||||||    
T  158213 taataggccaaacaaaaacgaaaatttcttg 158183  T

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Target: scaffold0727 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 874 - 837
Alignment:
Q  519 aaataacctatattacagaggataaaaacctattaacc 556  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  874 aaatgacctatattacagaggataaagacctattaacc 837  T

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Target: scaffold0727; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 943 - 972
Alignment:
Q  377 taataggccaaacaaaaacgaaaatttctt 406  Q
    ||||||||||||||||||||||||||||||    
T  943 taataggccaaacaaaaacgaaaatttctt 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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