View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_20 (Length: 333)
Name: NF11396_low_20
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 37309162 - 37309462
Alignment:
| Q |
18 |
atttttcatttccctcgcctatatccatacaagagaggtgttgttctttttgtgctctgatttctcaatttcattgcctctaatttcttccgtcttaatt |
117 |
Q |
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| T |
37309162 |
atttgtcatttccctcgcctatatccatacaagagaggtgttgttctttttgtgctctgatttctcaatttcattgcctctaatttcttccgtcttaatt |
37309261 |
T |
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| Q |
118 |
tcagtgtcaagcaaaaataatagtcacatgcagagctataaaaagatttctgtcatttcaggtcacaagcagagctagatcgctacttggaagcttcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37309262 |
tcagtgtcaagcaaaaataatagtcacatgcagagctataaaaagatttctgtcatttcaggtcacaagcagagctagatcgctacttggaagcttcaca |
37309361 |
T |
|
| Q |
218 |
gattagggagagagcaattgaaaggactaataatgttattggaacgtatgaaccaatcatttgtacctaatgtttcttcagagattttttaggcagttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37309362 |
gattagggagagagcaattgaaaggactaataatgttattggaacgtatgaaccgatcatttgtacctaatgtttcttcagagattttttaggcagttca |
37309461 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
37309462 |
t |
37309462 |
T |
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