View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_21 (Length: 326)

Name: NF11396_low_21
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_21
NF11396_low_21
[»] chr3 (11 HSPs)
chr3 (10-326)||(37587341-37587657)
chr3 (18-248)||(37580689-37580915)
chr3 (18-96)||(36811044-36811122)
chr3 (18-96)||(33708991-33709069)
chr3 (18-96)||(33714872-33714950)
chr3 (32-96)||(36875596-36875660)
chr3 (22-93)||(33093947-33094018)
chr3 (214-249)||(33396704-33396739)
chr3 (54-95)||(27005790-27005831)
chr3 (220-249)||(33708885-33708914)
chr3 (214-247)||(36875767-36875800)
[»] chr7 (1 HSPs)
chr7 (18-80)||(18724389-18724451)
[»] chr4 (1 HSPs)
chr4 (48-96)||(8187108-8187156)
[»] chr1 (1 HSPs)
chr1 (26-96)||(52082593-52082663)
[»] chr2 (1 HSPs)
chr2 (29-94)||(32785791-32785856)
[»] chr8 (2 HSPs)
chr8 (26-94)||(17636420-17636488)
chr8 (26-94)||(18315292-18315360)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 37587657 - 37587341
Alignment:
Q  10 agaagcaaagggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaatggaagctacata 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587657 agaagccaagggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaatggaagctacata 37587558  T
Q  110 gttgatcaaattaatatagattagcttgtggttgttagcagtaggccaagttcaaatgcctaatcttacaacaatgtatcaataccttcctcaatgtaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37587557 gttgatcaaattaatatagattagcttgtggttgttagcagtaggccaagttcaaatgcctaatcttacaacactgtatcaataccttcctcaatgtaat 37587458  T
Q  210 agcgagagctcaaatcaagaagttgcatattaggaaacatgagagggaaaggaaataatcggcaatgaaggatatgtcggtaatatgtggacttcacagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587457 agcgagagctcaaatcaagaagttgcatattaggaaacatgagagggaaaggaaataatcggcaatgaaggatatgtcggtaatatgtggacttcacagc 37587358  T
Q  310 catggcctacctgatac 326  Q
    |||||||||||||||||    
T  37587357 catggcctacctgatac 37587341  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 37580915 - 37580689
Alignment:
Q  18 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaatggaagctacatagttgatca 117  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||     |||||||| ||||||||||||    
T  37580915 agggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtt-----tggaagcttcatagttgatca 37580821  T
Q  118 aattaatatagattagcttgtggttgttagcagtaggccaagttcaaatgcctaatcttac-----------aacaatgtatcaataccttcctcaatgt 206  Q
        || |||||||||||||| |      |||   | | || || ||||||||||||||||           |||| | ||||||||||||| | |||||    
T  37580820 ----aacatagattagcttgtcg------gcaccggacaaatttaaaatgcctaatcttacgacatttctttaacactatatcaataccttctttaatgt 37580731  T
Q  207 aatagcgagagctcaaatcaagaagttgcatattaggaaaca 248  Q
    || ||| |||||||||||||||||||||||||||||||||||    
T  37580730 aaaagcaagagctcaaatcaagaagttgcatattaggaaaca 37580689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 36811122 - 36811044
Alignment:
Q  18 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    |||||||||||||||||| ||||||| | || ||| |||||||||||| || ||||||||||| |||||||||||||||    
T  36811122 agggcaaatctttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttggaa 36811044  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 33709069 - 33708991
Alignment:
Q  18 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    ||||||| |||||||||| ||||||||| |   ||||||||||||||||| |||||||||||  |||||||||||||||    
T  33709069 agggcaactctttgagattgcatacaatgcaccatcatcaattcttgagtctgacaagttcagcacctccagtttggaa 33708991  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 33714950 - 33714872
Alignment:
Q  18 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    ||||||| ||||||| |||||||||||| |   ||||||||||||||||| |||||||||||  |||||||||||||||    
T  33714950 agggcaactctttgaaatcgcatacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttggaa 33714872  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 36875596 - 36875660
Alignment:
Q  32 agatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    ||||| |||||| | ||| |||||| ||||||||||||||||||||||  |||||||| ||||||    
T  36875596 agatctcatacagtgcttgatcatcgattcttgagtgtgacaagttcaccacctccagattggaa 36875660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 33094018 - 33093947
Alignment:
Q  22 caaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttg 93  Q
    |||| ||||||||||||||| | ||||| |||||||| || ||| | |||||||||||| ||||| ||||||    
T  33094018 caaaactttgagatcgcataaagtacttcatcatcaactcatgactttgacaagttcaaaacctctagtttg 33093947  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 33396704 - 33396739
Alignment:
Q  214 agagctcaaatcaagaagttgcatattaggaaacat 249  Q
    |||||||||||||||||| |||||||||||||||||    
T  33396704 agagctcaaatcaagaagctgcatattaggaaacat 33396739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 27005831 - 27005790
Alignment:
Q  54 atcaattcttgagtgtgacaagttcaatacctccagtttgga 95  Q
    |||||||||||  |||||||||||||| ||||||||||||||    
T  27005831 atcaattcttgtatgtgacaagttcaagacctccagtttgga 27005790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 33708914 - 33708885
Alignment:
Q  220 caaatcaagaagttgcatattaggaaacat 249  Q
    ||||||||||||||||||||||||||||||    
T  33708914 caaatcaagaagttgcatattaggaaacat 33708885  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 36875767 - 36875800
Alignment:
Q  214 agagctcaaatcaagaagttgcatattaggaaac 247  Q
    |||||||||||||||||||||||| |||||||||    
T  36875767 agagctcaaatcaagaagttgcatgttaggaaac 36875800  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 18724451 - 18724389
Alignment:
Q  18 agggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaa 80  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18724451 agggaaaatctttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaa 18724389  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 8187156 - 8187108
Alignment:
Q  48 tttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  8187156 tttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaa 8187108  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 52082593 - 52082663
Alignment:
Q  26 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 96  Q
    ||||||||||| ||||||||  || |||||||||| |||  | |||||||||||| ||||||| |||||||    
T  52082593 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 52082663  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 32785856 - 32785791
Alignment:
Q  29 ttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttgg 94  Q
    |||||||| |||| | | ||| ||||||||||||||  |||||||||||||| ||||| |||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 32785791  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 17636488 - 17636420
Alignment:
Q  26 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttgg 94  Q
    ||||||||||| |||||||| ||| ||| |||| || ||  |||||||||||||| ||||||| |||||    
T  17636488 tctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgg 17636420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 18315360 - 18315292
Alignment:
Q  26 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttgg 94  Q
    ||||||||||| |||| | | ||| |||||||| | |||  |||||||||||||| |||||||||||||    
T  18315360 tctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgg 18315292  T

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