View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_22 (Length: 325)
Name: NF11396_low_22
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 19352188 - 19352477
Alignment:
| Q |
8 |
gagcacagatcggcaaatcaaaactgcagtaacacataagcttggttttatagcttcttaaaaatcacggtaggagcgaggtggactgtgtttggaacct |
107 |
Q |
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| T |
19352188 |
gagcacaaattggcaaatcaaaactgcggtaacacataagcttggttttgtagcttcttaaaaatcacggtaggagcgaggtggactgtgtttggaacct |
19352287 |
T |
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| Q |
108 |
ctaatgttcatacaaacacattttgaaaggaacaattagacaactgaatttaattattttccttgcaa--agtactcagaatttgtaatttggatcaatg |
205 |
Q |
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| T |
19352288 |
ctaatgttcaaacaaacacagtttgaaagcaataattagacaactgaatttaattattttccttgcaattagtactcagaatttgtaatttggatcaatg |
19352387 |
T |
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| Q |
206 |
taattttaacttactagagccctttataacttttcatcacaagaactctttaagagtacaatttaagagtgcaatgtcacaaattcattagcatggttta |
305 |
Q |
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| T |
19352388 |
taattttaacttaccagagccctttataacttttcatcacaagagctc-------------tttaagagtgcaatgtcacaaattcattagcatggttta |
19352474 |
T |
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 17315647 - 17315566
Alignment:
| Q |
176 |
agtactcagaatttgtaatttggatcaatgtaattttaacttactagagccctttataacttttcatcacaagaactcttta |
257 |
Q |
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| T |
17315647 |
agtaatcagacttggtaatttggatcaatgaaattttaacttactagagctctttttaactttgcattacaagatctcttta |
17315566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 17315777 - 17315696
Alignment:
| Q |
45 |
aagcttggttttatagcttcttaaaaatcacggtaggagcgaggtgga-ctgtgtttggaacctctaatgttcatacaaaca |
125 |
Q |
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| T |
17315777 |
aagcttggttttgtagcttattaaaaatcacggtaggagcaaggtggatgtgtgtttggagcctctaatttgcaaacaaaca |
17315696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 50169683 - 50169719
Alignment:
| Q |
42 |
cataagcttggttttatagcttcttaaaaatcacggt |
78 |
Q |
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| T |
50169683 |
cataagcttggttttctagcttcttagaaatcacggt |
50169719 |
T |
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