View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_25 (Length: 319)
Name: NF11396_low_25
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 37587370 - 37587076
Alignment:
| Q |
14 |
tggacatcacagccatggcctacctgatacaatgttgaagttgatagtagcagaagtacacttctaaaacattcaaagtagacaccagcagcattggttg |
113 |
Q |
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| T |
37587370 |
tggacttcacagccatggcctacctgatacaatgttgaagttgatagtagcagaagtacacttctaaaacattcaaagtagacaccagcagcattggttg |
37587271 |
T |
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| Q |
114 |
tttgaattatcattgtttgataacaattttnnnnnnnnnnnnnca-------ggtttgatatcaacaatggaccaatataggatgcaatagtattaatac |
206 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37587270 |
tttgaattatcattgtttgataacaatttaaaaataaataaaaaataaaaaaggtttgatatcaacaatggaccaatataggatgcaatagtattaatac |
37587171 |
T |
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| Q |
207 |
ctgaagttataaatcaaaatgattgaatgtagtgcataaacaaattagtaatgaggcaaaaatgatacgtgcaagagatttggtgcagttggagc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37587170 |
ctgaagttataaatcaaaatgattgaatgtagtgcataaacaaattagtaatgaggcgaaaatgatacgtgcaagagatttggtgcagttggagc |
37587076 |
T |
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