View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_27 (Length: 314)
Name: NF11396_low_27
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7049069 - 7049285
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactggccggttcaaccagttga |
119 |
Q |
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| T |
7049069 |
tggaggtcatggtatgtaaatggccaagtggcagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactggtcggttcaaccagttga |
7049168 |
T |
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| Q |
120 |
accgaaagtcagcatattcgccagttggcttgattccagttttatcatagtcccattgaactggactgaaccacaatcgaaccagattgaaccagtgtaa |
219 |
Q |
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| T |
7049169 |
accgaaagtcagcatattcgccagttggcttgattccagttttatcatagtcccgttgaactggactgaaccacaatcgaactaggttgaaccagtgtaa |
7049268 |
T |
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| Q |
220 |
ccgtgtggttcattcatca |
238 |
Q |
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| T |
7049269 |
c--tgtggttcgttcatca |
7049285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 7057986 - 7058170
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactggccggttcaaccagttga |
119 |
Q |
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| T |
7057986 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaacaggccggttcaaccagttga |
7058085 |
T |
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| Q |
120 |
accgaaagtcagcatattcgccagttggcttgattccagttttatcatagtcccattgaactggactgaaccacaatcgaaccag |
204 |
Q |
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| T |
7058086 |
accgaaagtcagcatattcgccagctggcttgattccagttttatcatagtcccattgaactggactgaaccacaatcgaaccag |
7058170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 7041969 - 7042175
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactg----gccggttcaaccag |
115 |
Q |
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| T |
7041969 |
tggaggccatggtttgtaaatggccaagtgggagggtaagtatgaaacttcatatcaatgttttgaaaattaaattgaactggtccgtcggttcaactgg |
7042068 |
T |
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| Q |
116 |
ttgaaccgaaagtcagcatattcgccagttggcttgattccagttttatcatagtcccattgaactggactgaaccacaatcgaaccagattgaaccagt |
215 |
Q |
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| T |
7042069 |
ttgaaccgaaagcctgccaattcgccaattggcttgattccagattaatcatagtcctgttgaactggaatgaatcacaaccgaaccaagttgaaccagt |
7042168 |
T |
|
| Q |
216 |
gtaaccg |
222 |
Q |
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| T |
7042169 |
gtaaccg |
7042175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 7005705 - 7005895
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttcatatcaatgttttaaaaattagattgaactggccggttcaaccagttga |
119 |
Q |
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| T |
7005705 |
tggaggccatggtttgtaaaagaccaagtgggagggtaagattaaaacgtcttatcaatgttttaaaaattggattgaactggtgagtacaactggttga |
7005804 |
T |
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| Q |
120 |
accgaaagtcagcatattcgccagttggcttgattccagttttatcatagtcccattgaactggactgaaccacaatcgaaccagattgaa |
210 |
Q |
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| T |
7005805 |
accgaacaccaaccaatccgccagttggctaggttccagttgtatcatagtcccatttaattggattgaatcacaatcgaaccaggttgaa |
7005895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 7022243 - 7022294
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttca |
71 |
Q |
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| T |
7022243 |
tggaggccatggtttgtaaatggtcaagtgggagggtaagcatcaaacttca |
7022294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 7028977 - 7029028
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttca |
71 |
Q |
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| T |
7028977 |
tggaggtcatggtttgtaaatggtcaagtggcagggtaagcatcaaacttca |
7029028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 7015497 - 7015548
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaaccttca |
71 |
Q |
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| T |
7015497 |
tggaggccatggtttgtaaatggccaagtaggagggtaagtatcaaacttca |
7015548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 6996583 - 6996628
Alignment:
| Q |
20 |
tggaggtcatggtttgtaaatggccaagtgggagggtaagcatcaa |
65 |
Q |
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| T |
6996583 |
tggaggccatggtttgtaaacggtcaagtgggagggtaagcatcaa |
6996628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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