View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_28 (Length: 309)
Name: NF11396_low_28
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 109 - 302
Target Start/End: Complemental strand, 26305675 - 26305475
Alignment:
| Q |
109 |
gttgaacaaactcctagtgtctacaatctgcaattgacaacattgttattcataaatgtttcatgattattaattattaatt-------tgtgacaatga |
201 |
Q |
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| T |
26305675 |
gttgaacaaactcctactgtctatgatctgcaattgacaacattgttattcataaatgtttcatcattattaattattaattattaatttgtgacaatga |
26305576 |
T |
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| Q |
202 |
tttatgagtctaaaatgacactttcttttttatttcttgaaaagatattaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgct |
301 |
Q |
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| T |
26305575 |
tttgtgactctaaaatgacactttcttttttatttcttgaaaagatattaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgct |
26305476 |
T |
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| Q |
302 |
t |
302 |
Q |
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| T |
26305475 |
t |
26305475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 26305789 - 26305700
Alignment:
| Q |
23 |
ctcacaacgttatcgaatagaagatatagtgtcgtagaattttaacaaattgttatcgttcagcaatacacaatttagtacacggtgttg |
112 |
Q |
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| T |
26305789 |
ctcacaatgttatcgaatagaagagatagtgtcgtagaattttaacaaattgttatcgttcggcgatacacaatttagtacacagtgttg |
26305700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 781293 - 781240
Alignment:
| Q |
249 |
ttaaaagatggcttggtgaagtgagaggaagagacctacctgaatcctttgctt |
302 |
Q |
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| T |
781293 |
ttaagagatggcttggtgaattgaaaggaaaagacttgcctgaatcctttgctt |
781240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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